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The map label for this gene is padR [H]

Identifier: 56963728

GI number: 56963728

Start: 2078692

End: 2079204

Strand: Direct

Name: padR [H]

Synonym: ABC1963

Alternate gene names: 56963728

Gene position: 2078692-2079204 (Clockwise)

Preceding gene: 56963724

Following gene: 56963729

Centisome position: 48.3

GC content: 38.01

Gene sequence:

>513_bases
ATGAAAACAGAGGCTAAATGGATTGTGCTTGGCATACTGTCAGGAGGATGTAGAACGGGATACGAAATAAAAAAGGTCAT
TGATAATAGTTTTGAGCATTTTTGGAAAATGAGTTATGGACAAATTTATCCCGCGCTTAAAACGTTAGTTAAAGAGGGGT
ATGTTAGTCAAATCGGAAGCGATGGGGATCGGAAGGAGTATGAGATAACGGAGGCAGGAAAGCATAAACTTCATGATTGG
CTGGTGGCTCCTATTTACGATAGTGGACTTCATAAAAATGAACTGCTCGTAAAACTGTTTTTTGGAAACGAAATGAACCG
AGAACACGCTTTTCACCACATTTGTGAACATGAACGGTTGTTACAAGGAAAAATGAAAGTTTACGAACAAATGGAAAAAC
AGCTAAGTATTCACCCCGGCGCTGAATTTTGGTTATATACGTTAGATTATGGAAAAGAAGTAGCTAAAGCTGAGCTGCAA
TGGTGCAAAAAAACAAAGGAGAAATTAAAATGA

Upstream 100 bases:

>100_bases
AAAGATGGGAGACGCTTTTCGTTAACTCATTATTGCTGTTGACAAATGGATCGAGTCCATATATCTTTTAGATATATCTT
AAAGATATATGGAGGGCGAG

Downstream 100 bases:

>100_bases
CAAAAGCGAAGCGAGTTAGTGCTCCCAATGACCAAGATGTAGTCATTTTTATCGTTGGCATGAAAATCCAGCAGTGGTGG
AATATCAAAGCATGGGGACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MKTEAKWIVLGILSGGCRTGYEIKKVIDNSFEHFWKMSYGQIYPALKTLVKEGYVSQIGSDGDRKEYEITEAGKHKLHDW
LVAPIYDSGLHKNELLVKLFFGNEMNREHAFHHICEHERLLQGKMKVYEQMEKQLSIHPGAEFWLYTLDYGKEVAKAELQ
WCKKTKEKLK

Sequences:

>Translated_170_residues
MKTEAKWIVLGILSGGCRTGYEIKKVIDNSFEHFWKMSYGQIYPALKTLVKEGYVSQIGSDGDRKEYEITEAGKHKLHDW
LVAPIYDSGLHKNELLVKLFFGNEMNREHAFHHICEHERLLQGKMKVYEQMEKQLSIHPGAEFWLYTLDYGKEVAKAELQ
WCKKTKEKLK
>Mature_170_residues
MKTEAKWIVLGILSGGCRTGYEIKKVIDNSFEHFWKMSYGQIYPALKTLVKEGYVSQIGSDGDRKEYEITEAGKHKLHDW
LVAPIYDSGLHKNELLVKLFFGNEMNREHAFHHICEHERLLQGKMKVYEQMEKQLSIHPGAEFWLYTLDYGKEVAKAELQ
WCKKTKEKLK

Specific function: Negative transcriptional regulator of padC phenolic acid decarboxylase [H]

COG id: COG1695

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018309
- InterPro:   IPR005149
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03551 PadR; PF10400 Vir_act_alpha_C [H]

EC number: NA

Molecular weight: Translated: 19908; Mature: 19908

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTEAKWIVLGILSGGCRTGYEIKKVIDNSFEHFWKMSYGQIYPALKTLVKEGYVSQIGS
CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DGDRKEYEITEAGKHKLHDWLVAPIYDSGLHKNELLVKLFFGNEMNREHAFHHICEHERL
CCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
LQGKMKVYEQMEKQLSIHPGAEFWLYTLDYGKEVAKAELQWCKKTKEKLK
HHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKTEAKWIVLGILSGGCRTGYEIKKVIDNSFEHFWKMSYGQIYPALKTLVKEGYVSQIGS
CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DGDRKEYEITEAGKHKLHDWLVAPIYDSGLHKNELLVKLFFGNEMNREHAFHHICEHERL
CCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
LQGKMKVYEQMEKQLSIHPGAEFWLYTLDYGKEVAKAELQWCKKTKEKLK
HHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]