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The map label for this gene is ykoE [H]

Identifier: 56963698

GI number: 56963698

Start: 2048386

End: 2048991

Strand: Direct

Name: ykoE [H]

Synonym: ABC1933

Alternate gene names: 56963698

Gene position: 2048386-2048991 (Clockwise)

Preceding gene: 56963697

Following gene: 56963699

Centisome position: 47.59

GC content: 48.84

Gene sequence:

>606_bases
ATGAACAAGAATCGCTTACGTTTGACAGACATGATTGTGACGATTTTGATTTCGGTTGTGTTTGCGGTCGTATACCGCCT
ATGGACGCCGGTCACGGACTTAGTCAGCCTCCCAGGGTTGCAAGCAGACCAGCTGCTGTATGGCATGTGGTTTATTGCCG
GAACAATTGCAGCATTGCTGATTAAAAAGCCAGGGGTTGCGTTGCTTGCCGAAACCGCGGCCGCTTCAGGGGAATTTTTT
GCTGGGTCCCCATACGGACCGTTGTTGCTGTTGTACGGCGCTTTGCAAGGGCTTGGAATTGAGTTGGCTTTTGCCCTATT
CAAATACCGCGTATATACAGTATGGACAGCTAGCCTTGGTGCTGTTTTCGCTTCGTTTGCCTCCCTTGGGCTCGATTATT
TTAATGCCTATTTGAGTGATTTAACGACTTGGAATATCACATTGCGCGTTGTTTTTCGCACGCTTGGCTCCATTATCATT
GCTGGCTTTTTAGCCTCTGCGCTTGTACGGGCACTGGAAAAGACAGGCGTCAGTACGCTTTTGCGCCCCGTTTCCCAAGC
CGATTACGACTTGTTTGCTTCGAAAAGGAGTAAAAAGGATGAGTAG

Upstream 100 bases:

>100_bases
CGCTGCTTTGGTTTGCCCATGGCAGGGTCGTGTGCGTCGCTCCATCCGTTTCGGGGGAGCGTTTTTTTGTGCCCTTTCCA
GTGGAAAAAGGAGACAGAAA

Downstream 100 bases:

>100_bases
AGAACAGGCTGTGTCCATCAAGCAGCTGTCGCTGTCTTATCCGAATAGCGGCACGTTATTATTTGAAGACTTGTCCATTG
ATATTTACTCAGGGGAGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MNKNRLRLTDMIVTILISVVFAVVYRLWTPVTDLVSLPGLQADQLLYGMWFIAGTIAALLIKKPGVALLAETAAASGEFF
AGSPYGPLLLLYGALQGLGIELAFALFKYRVYTVWTASLGAVFASFASLGLDYFNAYLSDLTTWNITLRVVFRTLGSIII
AGFLASALVRALEKTGVSTLLRPVSQADYDLFASKRSKKDE

Sequences:

>Translated_201_residues
MNKNRLRLTDMIVTILISVVFAVVYRLWTPVTDLVSLPGLQADQLLYGMWFIAGTIAALLIKKPGVALLAETAAASGEFF
AGSPYGPLLLLYGALQGLGIELAFALFKYRVYTVWTASLGAVFASFASLGLDYFNAYLSDLTTWNITLRVVFRTLGSIII
AGFLASALVRALEKTGVSTLLRPVSQADYDLFASKRSKKDE
>Mature_201_residues
MNKNRLRLTDMIVTILISVVFAVVYRLWTPVTDLVSLPGLQADQLLYGMWFIAGTIAALLIKKPGVALLAETAAASGEFF
AGSPYGPLLLLYGALQGLGIELAFALFKYRVYTVWTASLGAVFASFASLGLDYFNAYLSDLTTWNITLRVVFRTLGSIII
AGFLASALVRALEKTGVSTLLRPVSQADYDLFASKRSKKDE

Specific function: Part of the ABC transporter complex ykoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG4721

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017195 [H]

Pfam domain/function: PF09819 ABC_cobalt [H]

EC number: NA

Molecular weight: Translated: 21886; Mature: 21886

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKNRLRLTDMIVTILISVVFAVVYRLWTPVTDLVSLPGLQADQLLYGMWFIAGTIAALL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
IKKPGVALLAETAAASGEFFAGSPYGPLLLLYGALQGLGIELAFALFKYRVYTVWTASLG
HCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVFASFASLGLDYFNAYLSDLTTWNITLRVVFRTLGSIIIAGFLASALVRALEKTGVSTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
LRPVSQADYDLFASKRSKKDE
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNKNRLRLTDMIVTILISVVFAVVYRLWTPVTDLVSLPGLQADQLLYGMWFIAGTIAALL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
IKKPGVALLAETAAASGEFFAGSPYGPLLLLYGALQGLGIELAFALFKYRVYTVWTASLG
HCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVFASFASLGLDYFNAYLSDLTTWNITLRVVFRTLGSIIIAGFLASALVRALEKTGVSTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
LRPVSQADYDLFASKRSKKDE
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]