Click here to switch to the map view.

The map label for this gene is yabE [H]

Identifier: 56963694

GI number: 56963694

Start: 2043739

End: 2044806

Strand: Direct

Name: yabE [H]

Synonym: ABC1929

Alternate gene names: 56963694

Gene position: 2043739-2044806 (Clockwise)

Preceding gene: 56963693

Following gene: 56963696

Centisome position: 47.49

GC content: 43.73

Gene sequence:

>1068_bases
ATGAATATTGCTTACGAGGAAAGACGCCGCCGCCACTTAGGAGAACCTGTTGAAAAAAGCGCTAAAATTAAGGGGAGAGT
TACCATGCCTATAAAACTTTGTTTCTTCTTTATGAGCGTACTCTTGTTTAGTTTAATTAGTGTACCTGAACAGGCAGACG
CTGACACATTCAGTCCAATACACGAAGGTGAAAAAAGCGAACGCGTTGAGAAACTACAAGACTATCTTGTAGAGAGCGGC
TACTTAGAGGATCAAGATCGGTCCCATACATATGACAGTAAGGTAGTAGCAGCAGTTAAGCAATTCCAACAAGACAATAA
CTTATTAGTAGACGGCATTGCTGGGGTGCAAACCCTTGGTTCAATGGCTGTTTTACAAGAAGGAAGCGACGGGCTTCTTG
TTAACATGCTCCAAAAAAAATTAGCGCAGTTGCAATACTACCAAGCAGACATTGATGGGTACTACGGTGTATTGACAAAA
GCTGCGGTGACCGCTTTTCAAAAACAGAACGGCTTAGCAGTAGATGGTATCGCTGGCCCGCTAACCTTTAAAGCATTGTA
TTACAGTGAGGCAGAACCTGCTGAACAGCGAGAAAAGAAAAGTGAGAAAGCCAATGAAAACAATAATGGAGTAGAGAAAA
ACGAATCAAACAAAAGTGAAAATGGGGAAGAAGAAAACGAACTAAACGAAAGTACAAATGGTGACGTAGAGCAGCCAACA
GAGAAAAAAGAGGAAGAGCCAGCCAACACGGCTTCTTCTACACACAAAAGCGAAGGCAAAAAGACTTTCCAGATGGAAGC
AACCGCTTATACAGCGTATTGCCATGGTTGTTCGGGTACAACAGCGACAGGCATCGATTTGCGTGCCAATCCCAATCAAA
AAGTAGTAGCCGTTGATCCAGCAGTCATCCCTCTTGGCAGCCGTGTGCATGTAGAAGGGTATGGAGAAGCGATTGCTGGA
GATACAGGTGGGGCCATTAAAGGACAAAAGATCGACCTTTATATGCAATCAGAAGCGGATGCTTATGCATTCGGCAGGCA
ACAAGTGACTGTCACTTTGCTTGAATAA

Upstream 100 bases:

>100_bases
AGCTAAGTTACATTCAGATTAAAAAGCTTGTAACGTGGGTTAAAGAGGGACACGAGTGAGTAGGTATGGTAGCAGATTAC
GAGAAAGCGAGGCGAACAAG

Downstream 100 bases:

>100_bases
CAGGCTCTGCGTTGGCTACCATCATGTCGTCTAATAGAAAACCGTTGTTAGACGAGGAGTGCAGGCATAGAAAAGGATCA
ATAATTTGAGGCAACTTGCG

Product: peptidoglycan binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MNIAYEERRRRHLGEPVEKSAKIKGRVTMPIKLCFFFMSVLLFSLISVPEQADADTFSPIHEGEKSERVEKLQDYLVESG
YLEDQDRSHTYDSKVVAAVKQFQQDNNLLVDGIAGVQTLGSMAVLQEGSDGLLVNMLQKKLAQLQYYQADIDGYYGVLTK
AAVTAFQKQNGLAVDGIAGPLTFKALYYSEAEPAEQREKKSEKANENNNGVEKNESNKSENGEEENELNESTNGDVEQPT
EKKEEEPANTASSTHKSEGKKTFQMEATAYTAYCHGCSGTTATGIDLRANPNQKVVAVDPAVIPLGSRVHVEGYGEAIAG
DTGGAIKGQKIDLYMQSEADAYAFGRQQVTVTLLE

Sequences:

>Translated_355_residues
MNIAYEERRRRHLGEPVEKSAKIKGRVTMPIKLCFFFMSVLLFSLISVPEQADADTFSPIHEGEKSERVEKLQDYLVESG
YLEDQDRSHTYDSKVVAAVKQFQQDNNLLVDGIAGVQTLGSMAVLQEGSDGLLVNMLQKKLAQLQYYQADIDGYYGVLTK
AAVTAFQKQNGLAVDGIAGPLTFKALYYSEAEPAEQREKKSEKANENNNGVEKNESNKSENGEEENELNESTNGDVEQPT
EKKEEEPANTASSTHKSEGKKTFQMEATAYTAYCHGCSGTTATGIDLRANPNQKVVAVDPAVIPLGSRVHVEGYGEAIAG
DTGGAIKGQKIDLYMQSEADAYAFGRQQVTVTLLE
>Mature_355_residues
MNIAYEERRRRHLGEPVEKSAKIKGRVTMPIKLCFFFMSVLLFSLISVPEQADADTFSPIHEGEKSERVEKLQDYLVESG
YLEDQDRSHTYDSKVVAAVKQFQQDNNLLVDGIAGVQTLGSMAVLQEGSDGLLVNMLQKKLAQLQYYQADIDGYYGVLTK
AAVTAFQKQNGLAVDGIAGPLTFKALYYSEAEPAEQREKKSEKANENNNGVEKNESNKSENGEEENELNESTNGDVEQPT
EKKEEEPANTASSTHKSEGKKTFQMEATAYTAYCHGCSGTTATGIDLRANPNQKVVAVDPAVIPLGSRVHVEGYGEAIAG
DTGGAIKGQKIDLYMQSEADAYAFGRQQVTVTLLE

Specific function: Unknown

COG id: COG3584

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G5 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR007137
- InterPro:   IPR011098 [H]

Pfam domain/function: PF06725 3D; PF03990 DUF348; PF07501 G5 [H]

EC number: NA

Molecular weight: Translated: 38942; Mature: 38942

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIAYEERRRRHLGEPVEKSAKIKGRVTMPIKLCFFFMSVLLFSLISVPEQADADTFSPI
CCCCHHHHHHHHCCCCHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
HEGEKSERVEKLQDYLVESGYLEDQDRSHTYDSKVVAAVKQFQQDNNLLVDGIAGVQTLG
HCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHH
SMAVLQEGSDGLLVNMLQKKLAQLQYYQADIDGYYGVLTKAAVTAFQKQNGLAVDGIAGP
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEECCCCCC
LTFKALYYSEAEPAEQREKKSEKANENNNGVEKNESNKSENGEEENELNESTNGDVEQPT
CEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC
EKKEEEPANTASSTHKSEGKKTFQMEATAYTAYCHGCSGTTATGIDLRANPNQKVVAVDP
HHHHCCCCCCHHHHHHHCCCEEEEEEEEEEEEEEECCCCCCCCCEEEECCCCCEEEEECC
AVIPLGSRVHVEGYGEAIAGDTGGAIKGQKIDLYMQSEADAYAFGRQQVTVTLLE
EEECCCCEEEECCCCCEECCCCCCCCCCCEEEEEEECCCCHHHCCCCEEEEEEEC
>Mature Secondary Structure
MNIAYEERRRRHLGEPVEKSAKIKGRVTMPIKLCFFFMSVLLFSLISVPEQADADTFSPI
CCCCHHHHHHHHCCCCHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
HEGEKSERVEKLQDYLVESGYLEDQDRSHTYDSKVVAAVKQFQQDNNLLVDGIAGVQTLG
HCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHH
SMAVLQEGSDGLLVNMLQKKLAQLQYYQADIDGYYGVLTKAAVTAFQKQNGLAVDGIAGP
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEECCCCCC
LTFKALYYSEAEPAEQREKKSEKANENNNGVEKNESNKSENGEEENELNESTNGDVEQPT
CEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC
EKKEEEPANTASSTHKSEGKKTFQMEATAYTAYCHGCSGTTATGIDLRANPNQKVVAVDP
HHHHCCCCCCHHHHHHHCCCEEEEEEEEEEEEEEECCCCCCCCCEEEECCCCCEEEEECC
AVIPLGSRVHVEGYGEAIAGDTGGAIKGQKIDLYMQSEADAYAFGRQQVTVTLLE
EEECCCCEEEECCCCCEECCCCCCCCCCCEEEEEEECCCCHHHCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]