Click here to switch to the map view.

The map label for this gene is ypbD [H]

Identifier: 56963612

GI number: 56963612

Start: 1965064

End: 1965639

Strand: Direct

Name: ypbD [H]

Synonym: ABC1847

Alternate gene names: 56963612

Gene position: 1965064-1965639 (Clockwise)

Preceding gene: 56963611

Following gene: 56963613

Centisome position: 45.66

GC content: 47.74

Gene sequence:

>576_bases
ATGAAAGCAAACCGCCGCGCCACCACTCAGCTGGATAAAAAAGATTTCTACATCAGCCTATACGGTTCGCAATTGCTGCT
TTTGGTCATTGGCATCGCGTTAAGCTTTTTCTATACAGGCGGACCAGTTGGCATTTGGCACAGCCTTGAATTTCAGTGGG
CTACGGGAATAGGGAACGGAAGTTTGTTTGCTGTTGCCGCTCTGCTTCTAAATTGGCTGCTTGTCGTGTTGCTGCCAAAA
GGCTGGCTTGATGATGGGGGATTGAATGAGCGTGTTTTTACCGGCATGGGCCCTGTCCATATTGTCTGTTTTTGCTTGTT
GGTGGCCTTCTGCGAGGAATGGCTATTCAGAGCGGTTTTGCAACAGCTCGTTGGGCTGCCGCTGGCGAGTCTGCTGTTTG
CGATTGTCCATTTTCGCTATGTAACAAAGCCTGTGCTGTTTGCTTACGTACTCGTTATAAGCATAGGGCTTGGCTGGACG
TTTGAGGTGACAGGGAACTTTGCGACTGTAGTATGTGCGCATTTTTTCATTAACGCTGTTCTTGCCTTTGTTTTAAATGC
TAAGAACAGAAAGTAG

Upstream 100 bases:

>100_bases
CCCTTGACTCGTTTAAACGGACGCCTGTTAACGTAAATGAAGCGCCGTTTTTGTGGGAAGAAGAGCTTAAAGCCGTTTTT
GCAGTGGCGGAGGGAAAATG

Downstream 100 bases:

>100_bases
GAGGGGATGCCAATGAGCGAACAGCCGATTGATTTAGAAAACCAAGGAGAACCTGAAACGCTGCCTCCCCGTTCAAAAGT
ACGGCACCATAAAAAGAAAC

Product: protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MKANRRATTQLDKKDFYISLYGSQLLLLVIGIALSFFYTGGPVGIWHSLEFQWATGIGNGSLFAVAALLLNWLLVVLLPK
GWLDDGGLNERVFTGMGPVHIVCFCLLVAFCEEWLFRAVLQQLVGLPLASLLFAIVHFRYVTKPVLFAYVLVISIGLGWT
FEVTGNFATVVCAHFFINAVLAFVLNAKNRK

Sequences:

>Translated_191_residues
MKANRRATTQLDKKDFYISLYGSQLLLLVIGIALSFFYTGGPVGIWHSLEFQWATGIGNGSLFAVAALLLNWLLVVLLPK
GWLDDGGLNERVFTGMGPVHIVCFCLLVAFCEEWLFRAVLQQLVGLPLASLLFAIVHFRYVTKPVLFAYVLVISIGLGWT
FEVTGNFATVVCAHFFINAVLAFVLNAKNRK
>Mature_191_residues
MKANRRATTQLDKKDFYISLYGSQLLLLVIGIALSFFYTGGPVGIWHSLEFQWATGIGNGSLFAVAALLLNWLLVVLLPK
GWLDDGGLNERVFTGMGPVHIVCFCLLVAFCEEWLFRAVLQQLVGLPLASLLFAIVHFRYVTKPVLFAYVLVISIGLGWT
FEVTGNFATVVCAHFFINAVLAFVLNAKNRK

Specific function: Unknown

COG id: COG1266

COG function: function code R; Predicted metal-dependent membrane protease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003675 [H]

Pfam domain/function: PF02517 Abi [H]

EC number: NA

Molecular weight: Translated: 21188; Mature: 21188

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKANRRATTQLDKKDFYISLYGSQLLLLVIGIALSFFYTGGPVGIWHSLEFQWATGIGNG
CCCCCCHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEEEECCCCCC
SLFAVAALLLNWLLVVLLPKGWLDDGGLNERVFTGMGPVHIVCFCLLVAFCEEWLFRAVL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
QQLVGLPLASLLFAIVHFRYVTKPVLFAYVLVISIGLGWTFEVTGNFATVVCAHFFINAV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH
LAFVLNAKNRK
HHHHHHCCCCC
>Mature Secondary Structure
MKANRRATTQLDKKDFYISLYGSQLLLLVIGIALSFFYTGGPVGIWHSLEFQWATGIGNG
CCCCCCHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEEEECCCCCC
SLFAVAALLLNWLLVVLLPKGWLDDGGLNERVFTGMGPVHIVCFCLLVAFCEEWLFRAVL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
QQLVGLPLASLLFAIVHFRYVTKPVLFAYVLVISIGLGWTFEVTGNFATVVCAHFFINAV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH
LAFVLNAKNRK
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]