Click here to switch to the map view.

The map label for this gene is scpB

Identifier: 56963581

GI number: 56963581

Start: 1934434

End: 1935015

Strand: Direct

Name: scpB

Synonym: ABC1816

Alternate gene names: 56963581

Gene position: 1934434-1935015 (Clockwise)

Preceding gene: 56963580

Following gene: 56963582

Centisome position: 44.95

GC content: 45.53

Gene sequence:

>582_bases
ATGAGCATGCAAGCAAGTAAGCTCGCAAAAATCGAAGGTTTGCTGTTTGTCACAGGTGATGATGGCATTTCGCCAACAGA
AATGGCCGAACTGGTTGAAATTAGTGAAGACGAAGTCATTCAATTGCTTGAAGTGCTTTCAGAACAAATGGCAAAAGAGG
AGCGCGGCATTCGGTTAGCGCGTCTTGCCAACCGGTATCGGCTGACAACAAAAGTAGAACATGCTGATATGTATAAAAAG
CTGGCTTCATCGCCGATACACGGCGGTCTTTCCCGTGCAGCCCTTGAAACGTTAGCGATTGTTGCTTACAAACAACCAAT
CACACGGGCTGAAATTGACGAAGTACGGGGAGTCAAGTCGGAGAAAGCGTTGCAATCACTTGTATCAAAACTGTTAATTG
AAGAGTGCGGTCGGGCGTCTGGGACAGGCCGGGCAATCCTCTATGGCACGACGCCGTATTTTTTAGACCATTTTGGTTTA
GAGTCGTTAGCGGACTTGCCTGACTTAAAAGAGCTTGATTTAAATGAAGAAGAACAGGATGAAACGGATTTGTTCTTTGA
AAAGTTGAACGCTGACTTGTAA

Upstream 100 bases:

>100_bases
GTCACGTTTTTGGCCATGCTTGAGCTCATTAAAACACGGGCGATCCATTGTGTGCAAGAGGAGAGCTTTGCTGAAATTAT
GATTTACTTATGGGATGGGG

Downstream 100 bases:

>100_bases
AACAGCAATGAAGGAGTTTGCGCGATGCAATTAAACCGGCTTGTCAATTTTCACAAAACGCTTGGAGACAAAACTCGTTT
GCGCATCATTGCTTTGTTAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSMQASKLAKIEGLLFVTGDDGISPTEMAELVEISEDEVIQLLEVLSEQMAKEERGIRLARLANRYRLTTKVEHADMYKK
LASSPIHGGLSRAALETLAIVAYKQPITRAEIDEVRGVKSEKALQSLVSKLLIEECGRASGTGRAILYGTTPYFLDHFGL
ESLADLPDLKELDLNEEEQDETDLFFEKLNADL

Sequences:

>Translated_193_residues
MSMQASKLAKIEGLLFVTGDDGISPTEMAELVEISEDEVIQLLEVLSEQMAKEERGIRLARLANRYRLTTKVEHADMYKK
LASSPIHGGLSRAALETLAIVAYKQPITRAEIDEVRGVKSEKALQSLVSKLLIEECGRASGTGRAILYGTTPYFLDHFGL
ESLADLPDLKELDLNEEEQDETDLFFEKLNADL
>Mature_192_residues
SMQASKLAKIEGLLFVTGDDGISPTEMAELVEISEDEVIQLLEVLSEQMAKEERGIRLARLANRYRLTTKVEHADMYKKL
ASSPIHGGLSRAALETLAIVAYKQPITRAEIDEVRGVKSEKALQSLVSKLLIEECGRASGTGRAILYGTTPYFLDHFGLE
SLADLPDLKELDLNEEEQDETDLFFEKLNADL

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCPB_BACSK (Q5WH04)

Other databases:

- EMBL:   AP006627
- RefSeq:   YP_175312.1
- ProteinModelPortal:   Q5WH04
- SMR:   Q5WH04
- STRING:   Q5WH04
- EnsemblBacteria:   EBBACT00000046738
- GeneID:   3200671
- GenomeReviews:   AP006627_GR
- KEGG:   bcl:ABC1816
- NMPDR:   fig|66692.3.peg.1764
- eggNOG:   COG1386
- GeneTree:   EBGT00050000002500
- HOGENOM:   HBG752450
- OMA:   NILEEMQ
- BioCyc:   BCLA66692:ABC1816-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01804
- InterPro:   IPR005234
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF019345
- TIGRFAMs:   TIGR00281

Pfam domain/function: PF04079 DUF387

EC number: NA

Molecular weight: Translated: 21443; Mature: 21312

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMQASKLAKIEGLLFVTGDDGISPTEMAELVEISEDEVIQLLEVLSEQMAKEERGIRLA
CCCCHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHH
RLANRYRLTTKVEHADMYKKLASSPIHGGLSRAALETLAIVAYKQPITRAEIDEVRGVKS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCH
EKALQSLVSKLLIEECGRASGTGRAILYGTTPYFLDHFGLESLADLPDLKELDLNEEEQD
HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHCHHHHHCCCCCHHCCCCCCCCH
ETDLFFEKLNADL
HHHHHHHHHCCCC
>Mature Secondary Structure 
SMQASKLAKIEGLLFVTGDDGISPTEMAELVEISEDEVIQLLEVLSEQMAKEERGIRLA
CCCHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHH
RLANRYRLTTKVEHADMYKKLASSPIHGGLSRAALETLAIVAYKQPITRAEIDEVRGVKS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCH
EKALQSLVSKLLIEECGRASGTGRAILYGTTPYFLDHFGLESLADLPDLKELDLNEEEQD
HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHCHHHHHCCCCCHHCCCCCCCCH
ETDLFFEKLNADL
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA