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The map label for this gene is spoVAF [H]

Identifier: 56963492

GI number: 56963492

Start: 1855758

End: 1857212

Strand: Direct

Name: spoVAF [H]

Synonym: ABC1727

Alternate gene names: 56963492

Gene position: 1855758-1857212 (Clockwise)

Preceding gene: 56963491

Following gene: 56963494

Centisome position: 43.12

GC content: 46.67

Gene sequence:

>1455_bases
ATGCCTGGCCAAAAACAGCAAAAGTTGACTTCTTATGAAAAAGGGCTTGCCTTTTTGAAAAAGGAATTGGCGGTTGAAGA
CAACTTTGATTTGATTTGTTTGGAAATGCGGCATGCAAACAAACGGATGGCGCTTTTTTTAGTTGATGGTTTTGCCAAAG
ACATTGCGCTGACACAAATTCAACGGGAACTTTCCCACACGACTGAAGAGGAATTGCAAGACCGATATGATGCCTTACTA
CAAAGCCGGATTCCTTATGCAGAAGTTGAAACCGAAAGAGACTTGAACCAAGTCGTAGAGCAAGTGTTGGCTGGGCCAGC
AGCTTTGCTCGTCGAGGGCCTTGACTATTGCCTGCTGATTGACACGAGGGAGTACCCTGTTCGAAGCCCGGAGGAGCCGG
ATACAGAGCAAGTTGTTCGTGGTTCTAGAGACGGGCTTGTCGAAACACTTGTTATGAACGCAGCTCTCATCCGCAGAAGA
GTTCGTGACCGGACGCTCCGCGTTGTGTTCAAGCAAGTTGGGCGACGCTCTAAAACAGATATAGCCTTAATGTATATTGG
CGATATTGCTGATAAGCGTTACGTCGAGCAAATGACCGCTGCCCTTGATGCAATTGACACCGATGGTGTACCAATGGCAG
ATAAATCAATTGAAGAATTTATCTTTAAAGAAAGCAGCAATCCGTACCCACTTGTGCGTTATTCAGAACGGCCAGACGTG
TGTGCCACCCATTTATTTGAGGGCCATGTCCTTATTCTTGTCGATGGGTCGCCAAGTGTTATGATTACACCTACTACTTT
CTGGCACTTGCTTCAACATGCAGAGGAGTACCGTCAAAAACCAATCATAGGCGCAATGCTGCGGCTAGTCAGATTCGCCG
CTGTTTTTTCGTCGATCTTCTTGCTGCCGTTATGGTATTTATTCGCGACAAATCCATTTTTGTTGCCAGATAGTTTGGCC
TTTATCGGTACAGAAGAAAAAGGGAGCTTGCCACTGTTTGTCCAGTTTGTCATCGCAGAAGCAGGGATTGAAATGTTGCG
GATGGCGTCGATTCATACACCGAATGCAGTTGCAGAAGCGCTCGGGCTTGTAGCTGCCTTATTGATTGGCGATATTGCCA
TACAAGTCGGTGTCTTTTCCCCAGAAGTGATCCTCTACTTAGCGATTGCCGCTGTCGGTACGTTTGCAACACCTAGTTAT
GAACTTTCCCTTGCCAACCGATTTATGCGTGTACTTTTGTTGGTGGCTACTGCCGCCTTTCAGTTGCCAGGGCTTATGAT
TGCCTCGACCATTTGGTTAGTGATGCTTGTCCGTTTAAAGGGGATGGATGTTCCTTATATGTGGCCATTTATTCCTTTTA
ATGCAAAAGCATTACGGGACGTCGTGTTTCGAGTGCCAATGCCTGTAAAAAACCGCAGGCCAGTCATTATTCATCCCCAA
GATCCGGACCGTTAG

Upstream 100 bases:

>100_bases
GCTTTTTTTGTTGTTCGCTTTTCCTGACGGTGACTCACATATTTTTGGAAAGGAAAGCCAAGCTATGTAAAAGGACTGGA
CGATTGAAAGGGTGACAAGA

Downstream 100 bases:

>100_bases
CAAATCGGGGTTTCAATCAGCAGCCATGTCTATTTCGTACAAATCATCTTTTATAAAACGGTCTGCTTTTTGCACTGGCT
GGCTTTTGTCAGCTAAAACA

Product: stage V sporulation protein AF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MPGQKQQKLTSYEKGLAFLKKELAVEDNFDLICLEMRHANKRMALFLVDGFAKDIALTQIQRELSHTTEEELQDRYDALL
QSRIPYAEVETERDLNQVVEQVLAGPAALLVEGLDYCLLIDTREYPVRSPEEPDTEQVVRGSRDGLVETLVMNAALIRRR
VRDRTLRVVFKQVGRRSKTDIALMYIGDIADKRYVEQMTAALDAIDTDGVPMADKSIEEFIFKESSNPYPLVRYSERPDV
CATHLFEGHVLILVDGSPSVMITPTTFWHLLQHAEEYRQKPIIGAMLRLVRFAAVFSSIFLLPLWYLFATNPFLLPDSLA
FIGTEEKGSLPLFVQFVIAEAGIEMLRMASIHTPNAVAEALGLVAALLIGDIAIQVGVFSPEVILYLAIAAVGTFATPSY
ELSLANRFMRVLLLVATAAFQLPGLMIASTIWLVMLVRLKGMDVPYMWPFIPFNAKALRDVVFRVPMPVKNRRPVIIHPQ
DPDR

Sequences:

>Translated_484_residues
MPGQKQQKLTSYEKGLAFLKKELAVEDNFDLICLEMRHANKRMALFLVDGFAKDIALTQIQRELSHTTEEELQDRYDALL
QSRIPYAEVETERDLNQVVEQVLAGPAALLVEGLDYCLLIDTREYPVRSPEEPDTEQVVRGSRDGLVETLVMNAALIRRR
VRDRTLRVVFKQVGRRSKTDIALMYIGDIADKRYVEQMTAALDAIDTDGVPMADKSIEEFIFKESSNPYPLVRYSERPDV
CATHLFEGHVLILVDGSPSVMITPTTFWHLLQHAEEYRQKPIIGAMLRLVRFAAVFSSIFLLPLWYLFATNPFLLPDSLA
FIGTEEKGSLPLFVQFVIAEAGIEMLRMASIHTPNAVAEALGLVAALLIGDIAIQVGVFSPEVILYLAIAAVGTFATPSY
ELSLANRFMRVLLLVATAAFQLPGLMIASTIWLVMLVRLKGMDVPYMWPFIPFNAKALRDVVFRVPMPVKNRRPVIIHPQ
DPDR
>Mature_483_residues
PGQKQQKLTSYEKGLAFLKKELAVEDNFDLICLEMRHANKRMALFLVDGFAKDIALTQIQRELSHTTEEELQDRYDALLQ
SRIPYAEVETERDLNQVVEQVLAGPAALLVEGLDYCLLIDTREYPVRSPEEPDTEQVVRGSRDGLVETLVMNAALIRRRV
RDRTLRVVFKQVGRRSKTDIALMYIGDIADKRYVEQMTAALDAIDTDGVPMADKSIEEFIFKESSNPYPLVRYSERPDVC
ATHLFEGHVLILVDGSPSVMITPTTFWHLLQHAEEYRQKPIIGAMLRLVRFAAVFSSIFLLPLWYLFATNPFLLPDSLAF
IGTEEKGSLPLFVQFVIAEAGIEMLRMASIHTPNAVAEALGLVAALLIGDIAIQVGVFSPEVILYLAIAAVGTFATPSYE
LSLANRFMRVLLLVATAAFQLPGLMIASTIWLVMLVRLKGMDVPYMWPFIPFNAKALRDVVFRVPMPVKNRRPVIIHPQD
PDR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 54534; Mature: 54403

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS00116 DNA_POLYMERASE_B

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGQKQQKLTSYEKGLAFLKKELAVEDNFDLICLEMRHANKRMALFLVDGFAKDIALTQI
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCHHHHHHHHHH
QRELSHTTEEELQDRYDALLQSRIPYAEVETERDLNQVVEQVLAGPAALLVEGLDYCLLI
HHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEE
DTREYPVRSPEEPDTEQVVRGSRDGLVETLVMNAALIRRRVRDRTLRVVFKQVGRRSKTD
ECCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
IALMYIGDIADKRYVEQMTAALDAIDTDGVPMADKSIEEFIFKESSNPYPLVRYSERPDV
EEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCH
CATHLFEGHVLILVDGSPSVMITPTTFWHLLQHAEEYRQKPIIGAMLRLVRFAAVFSSIF
HHHHHCCCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LLPLWYLFATNPFLLPDSLAFIGTEEKGSLPLFVQFVIAEAGIEMLRMASIHTPNAVAEA
HHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LGLVAALLIGDIAIQVGVFSPEVILYLAIAAVGTFATPSYELSLANRFMRVLLLVATAAF
HHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
QLPGLMIASTIWLVMLVRLKGMDVPYMWPFIPFNAKALRDVVFRVPMPVKNRRPVIIHPQ
HCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCC
DPDR
CCCC
>Mature Secondary Structure 
PGQKQQKLTSYEKGLAFLKKELAVEDNFDLICLEMRHANKRMALFLVDGFAKDIALTQI
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCHHHHHHHHHH
QRELSHTTEEELQDRYDALLQSRIPYAEVETERDLNQVVEQVLAGPAALLVEGLDYCLLI
HHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEE
DTREYPVRSPEEPDTEQVVRGSRDGLVETLVMNAALIRRRVRDRTLRVVFKQVGRRSKTD
ECCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
IALMYIGDIADKRYVEQMTAALDAIDTDGVPMADKSIEEFIFKESSNPYPLVRYSERPDV
EEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCH
CATHLFEGHVLILVDGSPSVMITPTTFWHLLQHAEEYRQKPIIGAMLRLVRFAAVFSSIF
HHHHHCCCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LLPLWYLFATNPFLLPDSLAFIGTEEKGSLPLFVQFVIAEAGIEMLRMASIHTPNAVAEA
HHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LGLVAALLIGDIAIQVGVFSPEVILYLAIAAVGTFATPSYELSLANRFMRVLLLVATAAF
HHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
QLPGLMIASTIWLVMLVRLKGMDVPYMWPFIPFNAKALRDVVFRVPMPVKNRRPVIIHPQ
HCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCC
DPDR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 7934829; 1368705; 3926949 [H]