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The map label for this gene is ybeY [C]

Identifier: 56963443

GI number: 56963443

Start: 1808407

End: 1808889

Strand: Direct

Name: ybeY [C]

Synonym: ABC1678

Alternate gene names: 56963443

Gene position: 1808407-1808889 (Clockwise)

Preceding gene: 56963442

Following gene: 56963444

Centisome position: 42.02

GC content: 44.51

Gene sequence:

>483_bases
ATGATTGATGTGGAATTAAATGATGAAGGGCAGTTTCTTTCAAGCGAGCAATTGCAACTAGTTAAAGACGTCCTAAACCA
TGCTGCGCAAGAAGTGAGCTTGTCCCAGCAAAGCGAAGTGTCGGTGACATTTACTACGGAAGAGGACATTCACGAGTTAA
ACCGCGAACATCGAGGGATTGACCGCCCGACGGATGTACTGTCATTTGCTTTAAATGATGAGACAAGCGATTTTGATCCA
ACCTTTCATGAGGAGCTGGGCTTACCTAATTTGTTAGGGGACATCGTCATTTCAGTCCCCCATGTCGAGAGGCAGGCTGC
TGATTATGGCCATTCGTTTGAACGGGAACTTGCTTTTCTTGTTGTTCATGGCTTTCTTCATTTGCTTGGCTACGACCATA
TGAACGAGGAAGAGGAAAAGCAAATGTTCACTAAACAAGAGGAGATTTTACAATCCTATGGGCTTGGGAGATCGGAATCA
TAA

Upstream 100 bases:

>100_bases
CCGAATTAAACGCCATTAAAGTTTCCTTATGTGAAACGTTAAATGGCACATTCCATCAACGAATCGAGTATCCAGAAGAA
AAGCCTAAAGGAGAAAAACC

Downstream 100 bases:

>100_bases
AGGAATCCGCCGCTTTTTGCATTCGTTCCGTTATGCAAGCGCAGGGCTCATTGATGTCATTAAGCATGAGCAAAACATGC
GTATCCACTTAATTAGTGGG

Product: metal-dependent hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MIDVELNDEGQFLSSEQLQLVKDVLNHAAQEVSLSQQSEVSVTFTTEEDIHELNREHRGIDRPTDVLSFALNDETSDFDP
TFHEELGLPNLLGDIVISVPHVERQAADYGHSFERELAFLVVHGFLHLLGYDHMNEEEEKQMFTKQEEILQSYGLGRSES

Sequences:

>Translated_160_residues
MIDVELNDEGQFLSSEQLQLVKDVLNHAAQEVSLSQQSEVSVTFTTEEDIHELNREHRGIDRPTDVLSFALNDETSDFDP
TFHEELGLPNLLGDIVISVPHVERQAADYGHSFERELAFLVVHGFLHLLGYDHMNEEEEKQMFTKQEEILQSYGLGRSES
>Mature_160_residues
MIDVELNDEGQFLSSEQLQLVKDVLNHAAQEVSLSQQSEVSVTFTTEEDIHELNREHRGIDRPTDVLSFALNDETSDFDP
TFHEELGLPNLLGDIVISVPHVERQAADYGHSFERELAFLVVHGFLHLLGYDHMNEEEEKQMFTKQEEILQSYGLGRSES

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=119, Percent_Identity=37.8151260504202, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_BACSK (Q5WHE2)

Other databases:

- EMBL:   AP006627
- RefSeq:   YP_175174.1
- ProteinModelPortal:   Q5WHE2
- SMR:   Q5WHE2
- STRING:   Q5WHE2
- EnsemblBacteria:   EBBACT00000047347
- GeneID:   3201104
- GenomeReviews:   AP006627_GR
- KEGG:   bcl:ABC1678
- NMPDR:   fig|66692.3.peg.61
- eggNOG:   COG0319
- GeneTree:   EBGT00050000002084
- HOGENOM:   HBG734136
- OMA:   LNGYDHM
- BioCyc:   BCLA66692:ABC1678-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18269; Mature: 18269

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDVELNDEGQFLSSEQLQLVKDVLNHAAQEVSLSQQSEVSVTFTTEEDIHELNREHRGI
CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCC
DRPTDVLSFALNDETSDFDPTFHEELGLPNLLGDIVISVPHVERQAADYGHSFERELAFL
CCHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHH
VVHGFLHLLGYDHMNEEEEKQMFTKQEEILQSYGLGRSES
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIDVELNDEGQFLSSEQLQLVKDVLNHAAQEVSLSQQSEVSVTFTTEEDIHELNREHRGI
CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCC
DRPTDVLSFALNDETSDFDPTFHEELGLPNLLGDIVISVPHVERQAADYGHSFERELAFL
CCHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHH
VVHGFLHLLGYDHMNEEEEKQMFTKQEEILQSYGLGRSES
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA