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The map label for this gene is ydcR [C]

Identifier: 56963268

GI number: 56963268

Start: 1628601

End: 1629803

Strand: Direct

Name: ydcR [C]

Synonym: ABC1503

Alternate gene names: 56963268

Gene position: 1628601-1629803 (Clockwise)

Preceding gene: 56963267

Following gene: 56963271

Centisome position: 37.84

GC content: 46.05

Gene sequence:

>1203_bases
ATGAAATATGCATTTGCACAAAGGGTTCGCCATTTGAAGTCATCAGCTGTACGAGACATATTAAAAGTGGTGAACCGGGG
GGACGTCATTTCCTTTGCAGGAGGCTTGCCAGATGATGGCTTATTTCCGCTAAAGGCGATTGAAGAAGCATTTAGCCGCG
TGTTTGCAAGTGGAAATAAGGCATTGCAATACGGAGAAACAGAGGGGTATCTGCCTTTGCGCGAAGTCATTCTCGAACGG
ATGGAGAAAAAAGGCATAACAGGCTTAACCGCTGATGAGATGTTATTAACGACTGGTTCGCAGCAGGCAATCGATTTATT
TTCCCGCGTGATGATCGGGCCAGGGGACGTCATTTTTACGGAAGAGCCAACTTATTTAGCTGCATTGCAAGTTTTTCAGT
CGTACGAAGCGACAATTATTCCTGTTAAATGTGATGCAGACGGAATGATGATGGACGATTTAGTTCGAAAAATAAAAGAA
TATAAGCCTAAAGTCATTTATGTGGTTCCAACATTTTCAAACCCGACAGGCCGTGTTTGGACGCTCGAGCGGCGCAAAGA
ACTAGTGGGCTTAGCGCGTAAGCACCATGTTCTTATTTTTGAAGACGATCCATACGGCGACATCCAATTTACTCCAGGAG
GCTATACGCCAATTGCGGCTCTTGATGATGGCTCCCATGTGTTGTATACGAGTACGTTTTCCAAAACGGCCGTTCCTGCT
TTGCGGACGGGTTGGATAACGGGCCCATACCAAATTATCCGCATGATGGCGCAAGCGAAACAAGCCAATGACTTGCACTC
CAACTCGATTGGCCATCAGGCACTTTACCATCTATGCCGCAACTTCGATTTTGATGGTCATATCCACAACATTAGTGAGT
TGTACGGACACCGGAAGAATGTCATGGTTGATTGTTTGAAAGAGGCGAAAGAGCGCGGCTCGATTCAGTTTATCGAACCA
GAAGGCGGCATGTTCCTATGGGTAGAGGCAGAACCGCACGTTAATACAGAAGCTTTGCTGCCACGGGCTGTAGAAAAGGG
AATGGCCTATGTACCAGGACGGCCATTTTATGCAGGAGCGCCGCAATTAAATACACTGCGCCTTAACTTCACTCATGCAA
CTGATGCAGAAATTGAAAAAGGTATGGGCATTATGCTCGGCATTTTTGAAGAAGCGAAAGAGAAGTCATTGCTATTGAAC
TAA

Upstream 100 bases:

>100_bases
GTCAAAAGAGGAGTAGAATAGAAGTCATTCAATTAATCAGATTTTTTGGTGAGTGGACGAAAAAAAGAGAAAAAGATTAA
GAGATACCGGGGTGTTAGAG

Downstream 100 bases:

>100_bases
CTAATCGCTTAGCAAAAGACAGCCTCGTCCAAGACGAGGCTGTCTTTCTTTTGGCAAACGCTCGCATCCTTCGTTGTTCA
TTTCGGCTGACTAGCGTTTT

Product: aminotransferase

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MKYAFAQRVRHLKSSAVRDILKVVNRGDVISFAGGLPDDGLFPLKAIEEAFSRVFASGNKALQYGETEGYLPLREVILER
MEKKGITGLTADEMLLTTGSQQAIDLFSRVMIGPGDVIFTEEPTYLAALQVFQSYEATIIPVKCDADGMMMDDLVRKIKE
YKPKVIYVVPTFSNPTGRVWTLERRKELVGLARKHHVLIFEDDPYGDIQFTPGGYTPIAALDDGSHVLYTSTFSKTAVPA
LRTGWITGPYQIIRMMAQAKQANDLHSNSIGHQALYHLCRNFDFDGHIHNISELYGHRKNVMVDCLKEAKERGSIQFIEP
EGGMFLWVEAEPHVNTEALLPRAVEKGMAYVPGRPFYAGAPQLNTLRLNFTHATDAEIEKGMGIMLGIFEEAKEKSLLLN

Sequences:

>Translated_400_residues
MKYAFAQRVRHLKSSAVRDILKVVNRGDVISFAGGLPDDGLFPLKAIEEAFSRVFASGNKALQYGETEGYLPLREVILER
MEKKGITGLTADEMLLTTGSQQAIDLFSRVMIGPGDVIFTEEPTYLAALQVFQSYEATIIPVKCDADGMMMDDLVRKIKE
YKPKVIYVVPTFSNPTGRVWTLERRKELVGLARKHHVLIFEDDPYGDIQFTPGGYTPIAALDDGSHVLYTSTFSKTAVPA
LRTGWITGPYQIIRMMAQAKQANDLHSNSIGHQALYHLCRNFDFDGHIHNISELYGHRKNVMVDCLKEAKERGSIQFIEP
EGGMFLWVEAEPHVNTEALLPRAVEKGMAYVPGRPFYAGAPQLNTLRLNFTHATDAEIEKGMGIMLGIFEEAKEKSLLLN
>Mature_400_residues
MKYAFAQRVRHLKSSAVRDILKVVNRGDVISFAGGLPDDGLFPLKAIEEAFSRVFASGNKALQYGETEGYLPLREVILER
MEKKGITGLTADEMLLTTGSQQAIDLFSRVMIGPGDVIFTEEPTYLAALQVFQSYEATIIPVKCDADGMMMDDLVRKIKE
YKPKVIYVVPTFSNPTGRVWTLERRKELVGLARKHHVLIFEDDPYGDIQFTPGGYTPIAALDDGSHVLYTSTFSKTAVPA
LRTGWITGPYQIIRMMAQAKQANDLHSNSIGHQALYHLCRNFDFDGHIHNISELYGHRKNVMVDCLKEAKERGSIQFIEP
EGGMFLWVEAEPHVNTEALLPRAVEKGMAYVPGRPFYAGAPQLNTLRLNFTHATDAEIEKGMGIMLGIFEEAKEKSLLLN

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=411, Percent_Identity=28.2238442822384, Blast_Score=160, Evalue=2e-39,
Organism=Homo sapiens, GI33469970, Length=411, Percent_Identity=28.2238442822384, Blast_Score=160, Evalue=2e-39,
Organism=Escherichia coli, GI1787710, Length=354, Percent_Identity=26.271186440678, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1790797, Length=361, Percent_Identity=26.3157894736842, Blast_Score=128, Evalue=8e-31,
Organism=Escherichia coli, GI1788627, Length=214, Percent_Identity=24.2990654205607, Blast_Score=69, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17567663, Length=223, Percent_Identity=26.0089686098655, Blast_Score=71, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6321929, Length=390, Percent_Identity=23.3333333333333, Blast_Score=99, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6321236, Length=439, Percent_Identity=23.6902050113895, Blast_Score=97, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6321000, Length=374, Percent_Identity=22.7272727272727, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21356535, Length=316, Percent_Identity=25, Blast_Score=102, Evalue=4e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 44732; Mature: 44732

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYAFAQRVRHLKSSAVRDILKVVNRGDVISFAGGLPDDGLFPLKAIEEAFSRVFASGNK
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC
ALQYGETEGYLPLREVILERMEKKGITGLTADEMLLTTGSQQAIDLFSRVMIGPGDVIFT
EEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEE
EEPTYLAALQVFQSYEATIIPVKCDADGMMMDDLVRKIKEYKPKVIYVVPTFSNPTGRVW
CCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEE
TLERRKELVGLARKHHVLIFEDDPYGDIQFTPGGYTPIAALDDGSHVLYTSTFSKTAVPA
EHHHHHHHHHHHHHCEEEEECCCCCCCEEECCCCCCEEEEECCCCEEEEEECCCHHHCCH
LRTGWITGPYQIIRMMAQAKQANDLHSNSIGHQALYHLCRNFDFDGHIHNISELYGHRKN
HHCCCCCCHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCHH
VMVDCLKEAKERGSIQFIEPEGGMFLWVEAEPHVNTEALLPRAVEKGMAYVPGRPFYAGA
HHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCCC
PQLNTLRLNFTHATDAEIEKGMGIMLGIFEEAKEKSLLLN
CCCEEEEEEEECCCCHHHHCCCCEEEHHHHHHHHHHCCCC
>Mature Secondary Structure
MKYAFAQRVRHLKSSAVRDILKVVNRGDVISFAGGLPDDGLFPLKAIEEAFSRVFASGNK
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC
ALQYGETEGYLPLREVILERMEKKGITGLTADEMLLTTGSQQAIDLFSRVMIGPGDVIFT
EEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEE
EEPTYLAALQVFQSYEATIIPVKCDADGMMMDDLVRKIKEYKPKVIYVVPTFSNPTGRVW
CCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEE
TLERRKELVGLARKHHVLIFEDDPYGDIQFTPGGYTPIAALDDGSHVLYTSTFSKTAVPA
EHHHHHHHHHHHHHCEEEEECCCCCCCEEECCCCCCEEEEECCCCEEEEEECCCHHHCCH
LRTGWITGPYQIIRMMAQAKQANDLHSNSIGHQALYHLCRNFDFDGHIHNISELYGHRKN
HHCCCCCCHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCHH
VMVDCLKEAKERGSIQFIEPEGGMFLWVEAEPHVNTEALLPRAVEKGMAYVPGRPFYAGA
HHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCCC
PQLNTLRLNFTHATDAEIEKGMGIMLGIFEEAKEKSLLLN
CCCEEEEEEEECCCCHHHHCCCCEEEHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]