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The map label for this gene is yhdW [H]

Identifier: 56963205

GI number: 56963205

Start: 1552935

End: 1553642

Strand: Direct

Name: yhdW [H]

Synonym: ABC1440

Alternate gene names: 56963205

Gene position: 1552935-1553642 (Clockwise)

Preceding gene: 56963203

Following gene: 56963206

Centisome position: 36.08

GC content: 44.21

Gene sequence:

>708_bases
ATGATTAAAGCAATTGCCCATCGCGGCTATTCGCGCAAATACCCAGAAAACACGCTGTCTGCGTTCGAAGCGGCAATCCG
TTTAGGTTTTTATTGGATTGAAATGGACGTGAGGCTTACGAAAGACGGTGTACCGCTGATTATCCACGACCCAAAAGTCG
ACCGGGTGACGAATGGCAAGGGATGCGTAAAAGATTACTCCCTTGCTGCGTTAAAAGAGTTAACGGTCTATGAAAAAGAA
CGACTTCCTACTTTAAAAGAAGTGTTTGCTGCTTTTGCTGGCCGCTGCAAAATGGCGATAGAGCTAAAGAAAGACAAAAA
CGGCGACAATGGCATTGAGCATGCGGTATACCAATTGATTAAAGACTATAACTTGGAGCAGGATGTTTATATCAATTCAT
TTAACCATGCGTCCATTGAAAGGATGCGGGAACTTTCTCCAGCGCTTGAGCTGGGCCTTATTCAAACGAAGCCAACGAAA
GCATTGCTTCCATATATGAAGACAATCAATGCTTCCTCTCTGGCTATTCACATCCGCCATTTCAGCAGAAAATTCGCGGA
GCAGTGCAGTCGTGAAGGCGTGCAATTGATTGTTTATAACGTTGACAGTGTCCGTTTGATTAAAAAAATGAGCAACTTCC
CGAATGTTCGTTGCACCGTAAATGAACTGGAACGGTTCAAGAAGTGGTATAAGCCAGCAGGTAGTTGA

Upstream 100 bases:

>100_bases
GAAGGGTTTATTTTTAAGTTTATGTTATAAGTTACTGACTTTTCCTTGAAAAATCGATTGTCTCCATTTAATGTGAGAGA
ACGGGTGAGGTGGTGACCGA

Downstream 100 bases:

>100_bases
TTGGTTTAAGCGAGTCGATCGATAACAGTCGATCATCGGTAAAGGGAGGCAGACAAAAATGAAGGGGAAAAATGTCTATT
TGCGTGAGTTTAAAATTGAT

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MIKAIAHRGYSRKYPENTLSAFEAAIRLGFYWIEMDVRLTKDGVPLIIHDPKVDRVTNGKGCVKDYSLAALKELTVYEKE
RLPTLKEVFAAFAGRCKMAIELKKDKNGDNGIEHAVYQLIKDYNLEQDVYINSFNHASIERMRELSPALELGLIQTKPTK
ALLPYMKTINASSLAIHIRHFSRKFAEQCSREGVQLIVYNVDSVRLIKKMSNFPNVRCTVNELERFKKWYKPAGS

Sequences:

>Translated_235_residues
MIKAIAHRGYSRKYPENTLSAFEAAIRLGFYWIEMDVRLTKDGVPLIIHDPKVDRVTNGKGCVKDYSLAALKELTVYEKE
RLPTLKEVFAAFAGRCKMAIELKKDKNGDNGIEHAVYQLIKDYNLEQDVYINSFNHASIERMRELSPALELGLIQTKPTK
ALLPYMKTINASSLAIHIRHFSRKFAEQCSREGVQLIVYNVDSVRLIKKMSNFPNVRCTVNELERFKKWYKPAGS
>Mature_235_residues
MIKAIAHRGYSRKYPENTLSAFEAAIRLGFYWIEMDVRLTKDGVPLIIHDPKVDRVTNGKGCVKDYSLAALKELTVYEKE
RLPTLKEVFAAFAGRCKMAIELKKDKNGDNGIEHAVYQLIKDYNLEQDVYINSFNHASIERMRELSPALELGLIQTKPTK
ALLPYMKTINASSLAIHIRHFSRKFAEQCSREGVQLIVYNVDSVRLIKKMSNFPNVRCTVNELERFKKWYKPAGS

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=98, Percent_Identity=38.7755102040816, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17542344, Length=166, Percent_Identity=28.3132530120482, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17561436, Length=154, Percent_Identity=29.2207792207792, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 26974; Mature: 26974

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKAIAHRGYSRKYPENTLSAFEAAIRLGFYWIEMDVRLTKDGVPLIIHDPKVDRVTNGK
CCCHHHHCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEEECCCCEEEEECCCCCCCCCCC
GCVKDYSLAALKELTVYEKERLPTLKEVFAAFAGRCKMAIELKKDKNGDNGIEHAVYQLI
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHH
KDYNLEQDVYINSFNHASIERMRELSPALELGLIQTKPTKALLPYMKTINASSLAIHIRH
HHCCCCCCEEEECCCHHHHHHHHHHCHHHHHCEECCCCHHHHHHHHHHCCCCHHHHHHHH
FSRKFAEQCSREGVQLIVYNVDSVRLIKKMSNFPNVRCTVNELERFKKWYKPAGS
HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIKAIAHRGYSRKYPENTLSAFEAAIRLGFYWIEMDVRLTKDGVPLIIHDPKVDRVTNGK
CCCHHHHCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEEECCCCEEEEECCCCCCCCCCC
GCVKDYSLAALKELTVYEKERLPTLKEVFAAFAGRCKMAIELKKDKNGDNGIEHAVYQLI
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHH
KDYNLEQDVYINSFNHASIERMRELSPALELGLIQTKPTKALLPYMKTINASSLAIHIRH
HHCCCCCCEEEECCCHHHHHHHHHHCHHHHHCEECCCCHHHHHHHHHHCCCCHHHHHHHH
FSRKFAEQCSREGVQLIVYNVDSVRLIKKMSNFPNVRCTVNELERFKKWYKPAGS
HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]