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The map label for this gene is 55981911

Identifier: 55981911

GI number: 55981911

Start: 1821713

End: 1822297

Strand: Reverse

Name: 55981911

Synonym: TTHA1942

Alternate gene names: NA

Gene position: 1822297-1821713 (Counterclockwise)

Preceding gene: 55981912

Following gene: 55981909

Centisome position: 98.52

GC content: 67.18

Gene sequence:

>585_bases
ATGAAGAGGCTCCTGCCCGCCTTCCTTCTGGTCCTTGCCCTCTTGGCCCTGGCCTACCTCCTCCTTCCCCGGGGGCACAC
CTTCTACGGCACGAGGCTTCTCAACCCCAAGCCTGTGGACTTCGCCCTGGAAGGCCCCCAAGGCCCCGTGCGCCTCTCCC
AGTTCCAGGACAAGGTGGTCCTCCTCTTCTTCGGCTTCACCCGCTGCCCCGACGTCTGCCCCACCACCCTCCTCGCCCTC
AAGCGGGCCTACGAGAAACTCCCCCCGAAGGCCCAGGAGCGTGTCCAGGTGATCTTCGTGAGCGTGGACCCCGAGCGGGA
CCCCCCGGAGGTCGCCGACCGCTACGCCAAGGCCTTCCACCCGAGCTTCCTCGGGCTTTCGGGAAGCCCGGAGGCGGTTC
GGGAGGCGGCCCAGACCTTCGGGGTCTTCTACCAGAAGAGCCAGTACCGGGGCCCGGGGGAGTACCTGGTGGACCACACC
GCCACCACCTTCGTGGTGAAGGAGGGGAGGCTCGTCCTCCTCTATAGCCCGGACAAGGCGGAGGCCACGGACAGGGTGGT
GGCGGACCTTCAGGCCCTTCTTTAA

Upstream 100 bases:

>100_bases
TCGGCCTGAAGCGGCCCCTAAAGGCAGGGGAGGAGGTGGAGCTTGACCTCCTCTTCGCCGGGGGGAAGGTCCTTAAGGTG
GTCCTTCCCGTGGAGGCGCG

Downstream 100 bases:

>100_bases
GGGCTTCGCCCCGGCGCTCAGCCCAGGGCCACGTCCAGGGCCATCATCAGGGCGAAGCCCGTCATGACCCCGAAGGTGGC
GGTGTCCCCGTTTCCCTCCG

Product: cytochrome C oxidase assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MKRLLPAFLLVLALLALAYLLLPRGHTFYGTRLLNPKPVDFALEGPQGPVRLSQFQDKVVLLFFGFTRCPDVCPTTLLAL
KRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHT
ATTFVVKEGRLVLLYSPDKAEATDRVVADLQALL

Sequences:

>Translated_194_residues
MKRLLPAFLLVLALLALAYLLLPRGHTFYGTRLLNPKPVDFALEGPQGPVRLSQFQDKVVLLFFGFTRCPDVCPTTLLAL
KRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHT
ATTFVVKEGRLVLLYSPDKAEATDRVVADLQALL
>Mature_194_residues
MKRLLPAFLLVLALLALAYLLLPRGHTFYGTRLLNPKPVDFALEGPQGPVRLSQFQDKVVLLFFGFTRCPDVCPTTLLAL
KRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHT
ATTFVVKEGRLVLLYSPDKAEATDRVVADLQALL

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=135, Percent_Identity=37.037037037037, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI281182722, Length=135, Percent_Identity=37.037037037037, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI281182716, Length=135, Percent_Identity=37.037037037037, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI153791313, Length=135, Percent_Identity=37.037037037037, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI4759068, Length=110, Percent_Identity=33.6363636363636, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17531419, Length=131, Percent_Identity=30.5343511450382, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6319498, Length=161, Percent_Identity=29.8136645962733, Blast_Score=88, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6319511, Length=139, Percent_Identity=33.8129496402878, Blast_Score=87, Evalue=1e-18,
Organism=Drosophila melanogaster, GI19920710, Length=153, Percent_Identity=36.6013071895425, Blast_Score=102, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21648; Mature: 21648

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLLPAFLLVLALLALAYLLLPRGHTFYGTRLLNPKPVDFALEGPQGPVRLSQFQDKVV
CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCEEHHHHCCCEE
LLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFH
EEEECHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHC
PSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKA
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCEEEEEEECCCEEEEECCCCC
EATDRVVADLQALL
HHHHHHHHHHHHHC
>Mature Secondary Structure
MKRLLPAFLLVLALLALAYLLLPRGHTFYGTRLLNPKPVDFALEGPQGPVRLSQFQDKVV
CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCEEHHHHCCCEE
LLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFH
EEEECHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHC
PSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKA
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCEEEEEEECCCEEEEECCCCC
EATDRVVADLQALL
HHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA