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The map label for this gene is ugpB [H]

Identifier: 55981905

GI number: 55981905

Start: 1815741

End: 1816937

Strand: Reverse

Name: ugpB [H]

Synonym: TTHA1936

Alternate gene names: 55981905

Gene position: 1816937-1815741 (Counterclockwise)

Preceding gene: 55981907

Following gene: 55981904

Centisome position: 98.23

GC content: 70.43

Gene sequence:

>1197_bases
ATGCGGAAGCTTCTTCCCTTGGCGCTTCTGGGCCTTTCCGCCTTCGCCCAGGTGGACGTGCCCTTCTGGCACGCCATGGA
CGGCCCGGCGGGGAGGCTCATCGCCGCCTTCGCCCAGGAGTTCAACGCCCGGCAGGACCGCTACCGGGTCCTTCCCCGGT
ACCAGGGGACCTACGAAGAGGCGGAGACCAAGCTGGTGGCCGCCCTCCGGGCGGGGAGCGGCCCCGTCCTCTTCCAGGCG
GAGCTCTCCTTCTTCCCCCGCCTCGTGGCCGAGGGGCAGGCCCTTCCCCTGGAGGCCTACCTGGACCTGGACCCCGGTTT
CGTGGCCGACCTCTTCGCGCCCGCCTGGAACTACGGGGTGGTGGGGGGGAGGCGCTTTGGCCTCCCCTTCAACACCTCCA
CCCCGGTCCTCTTCTACAACCTGGACGTGTTCCGGGCGAAGGGCCTCGAGGCCCCCCGGGACTGGCGGGCCTTTGAAAGG
ACCGCCCTCGCCCTCACCTCCCGCGCCGCCAAGGGCTTCATCTTCGTCACCGACCCCCATGCCTGGCTCTTTGAGGCCAT
GGTGACGAGCCGGGGGGGAAGCCTGGTGCAGGACGACCGGCCCAACTTCACCTCCAGGGAGGCCGTGGCCGCCTTGGAGA
TGCTCTACCGCCTCAAGGAGGCCGGGGCCCTTTCCGTGCGCAGCATGGCCGAGGCCACCTTCGCCCAGCTGGACTTCGTG
CGCACCAAGGGGATGATGGTCATGGCCTCCATCGCCAACTGGCCCGCCGCCGAGAACTTCTCCTTCGCCTTCGCCCTGGG
GGTGGCCCCCGTGCCCCGGGAGGAGGGAGGGAAGGTGCCCATGGGCGGGGCCCAGCTCGTGGTCCTGAAGGGGGCCTCCG
AGGCCCAGGTGCGGGGGGCGGTGGCCTTCTGGAAGTACCTCATGGAGCCGGAGAACGTGGCCCGCTGGGTGGAGGCGAGC
TACTACGTGCCCCTGCGCAAAAGCGCCCTCCCCCTCCTCGAGGGCTTCTACCGGGAGAACCCCTTCCGCAAGGTGGCCTT
TGAGCAGGTCGCCCACGCCCAGGAGCGCCCCCGTCTTTCCCAGTTCTCCGCCTGGGCCCGCGTCCTCGCCGAGGCCCTGG
AGCGGAGCCTCAAGGGCGGGGTTCCCCCGCGAAAGGCCCTGGAGGAGGCCCAGCGGAAGGCGGAGGCGATGCGGTGA

Upstream 100 bases:

>100_bases
AAGCTCCAGGATGGGCTTGAGGGCGTGGGAAGCGGCCATACCCTCCCATTGTAGCCGAGACCCTCCCATTGTAGCCGAGA
AGGGTAGTAGAATCCGGGCC

Downstream 100 bases:

>100_bases
TGCGGGCCTTTCTCCTCACCGGCCACGGAGGCTTAGACCGCCACCGCTTCGTCACCGGCTGGCCCATCCCCGAGCCCGGC
CCCAAAGAGGTCCGCGTCCA

Product: glycerol-3-phosphate ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MRKLLPLALLGLSAFAQVDVPFWHAMDGPAGRLIAAFAQEFNARQDRYRVLPRYQGTYEEAETKLVAALRAGSGPVLFQA
ELSFFPRLVAEGQALPLEAYLDLDPGFVADLFAPAWNYGVVGGRRFGLPFNTSTPVLFYNLDVFRAKGLEAPRDWRAFER
TALALTSRAAKGFIFVTDPHAWLFEAMVTSRGGSLVQDDRPNFTSREAVAALEMLYRLKEAGALSVRSMAEATFAQLDFV
RTKGMMVMASIANWPAAENFSFAFALGVAPVPREEGGKVPMGGAQLVVLKGASEAQVRGAVAFWKYLMEPENVARWVEAS
YYVPLRKSALPLLEGFYRENPFRKVAFEQVAHAQERPRLSQFSAWARVLAEALERSLKGGVPPRKALEEAQRKAEAMR

Sequences:

>Translated_398_residues
MRKLLPLALLGLSAFAQVDVPFWHAMDGPAGRLIAAFAQEFNARQDRYRVLPRYQGTYEEAETKLVAALRAGSGPVLFQA
ELSFFPRLVAEGQALPLEAYLDLDPGFVADLFAPAWNYGVVGGRRFGLPFNTSTPVLFYNLDVFRAKGLEAPRDWRAFER
TALALTSRAAKGFIFVTDPHAWLFEAMVTSRGGSLVQDDRPNFTSREAVAALEMLYRLKEAGALSVRSMAEATFAQLDFV
RTKGMMVMASIANWPAAENFSFAFALGVAPVPREEGGKVPMGGAQLVVLKGASEAQVRGAVAFWKYLMEPENVARWVEAS
YYVPLRKSALPLLEGFYRENPFRKVAFEQVAHAQERPRLSQFSAWARVLAEALERSLKGGVPPRKALEEAQRKAEAMR
>Mature_398_residues
MRKLLPLALLGLSAFAQVDVPFWHAMDGPAGRLIAAFAQEFNARQDRYRVLPRYQGTYEEAETKLVAALRAGSGPVLFQA
ELSFFPRLVAEGQALPLEAYLDLDPGFVADLFAPAWNYGVVGGRRFGLPFNTSTPVLFYNLDVFRAKGLEAPRDWRAFER
TALALTSRAAKGFIFVTDPHAWLFEAMVTSRGGSLVQDDRPNFTSREAVAALEMLYRLKEAGALSVRSMAEATFAQLDFV
RTKGMMVMASIANWPAAENFSFAFALGVAPVPREEGGKVPMGGAQLVVLKGASEAQVRGAVAFWKYLMEPENVARWVEAS
YYVPLRKSALPLLEGFYRENPFRKVAFEQVAHAQERPRLSQFSAWARVLAEALERSLKGGVPPRKALEEAQRKAEAMR

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=412, Percent_Identity=26.6990291262136, Blast_Score=144, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 44132; Mature: 44132

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLLPLALLGLSAFAQVDVPFWHAMDGPAGRLIAAFAQEFNARQDRYRVLPRYQGTYEE
CCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHH
AETKLVAALRAGSGPVLFQAELSFFPRLVAEGQALPLEAYLDLDPGFVADLFAPAWNYGV
HHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCC
VGGRRFGLPFNTSTPVLFYNLDVFRAKGLEAPRDWRAFERTALALTSRAAKGFIFVTDPH
CCCEEECCCCCCCCCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCH
AWLFEAMVTSRGGSLVQDDRPNFTSREAVAALEMLYRLKEAGALSVRSMAEATFAQLDFV
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RTKGMMVMASIANWPAAENFSFAFALGVAPVPREEGGKVPMGGAQLVVLKGASEAQVRGA
HHCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHH
VAFWKYLMEPENVARWVEASYYVPLRKSALPLLEGFYRENPFRKVAFEQVAHAQERPRLS
HHHHHHHHCHHHHHHHHHHHEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH
QFSAWARVLAEALERSLKGGVPPRKALEEAQRKAEAMR
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRKLLPLALLGLSAFAQVDVPFWHAMDGPAGRLIAAFAQEFNARQDRYRVLPRYQGTYEE
CCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHH
AETKLVAALRAGSGPVLFQAELSFFPRLVAEGQALPLEAYLDLDPGFVADLFAPAWNYGV
HHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCC
VGGRRFGLPFNTSTPVLFYNLDVFRAKGLEAPRDWRAFERTALALTSRAAKGFIFVTDPH
CCCEEECCCCCCCCCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCH
AWLFEAMVTSRGGSLVQDDRPNFTSREAVAALEMLYRLKEAGALSVRSMAEATFAQLDFV
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RTKGMMVMASIANWPAAENFSFAFALGVAPVPREEGGKVPMGGAQLVVLKGASEAQVRGA
HHCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHH
VAFWKYLMEPENVARWVEASYYVPLRKSALPLLEGFYRENPFRKVAFEQVAHAQERPRLS
HHHHHHHHCHHHHHHHHHHHEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH
QFSAWARVLAEALERSLKGGVPPRKALEEAQRKAEAMR
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA