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The map label for this gene is lytR [H]

Identifier: 55981747

GI number: 55981747

Start: 1664596

End: 1665693

Strand: Reverse

Name: lytR [H]

Synonym: TTHA1778

Alternate gene names: 55981747

Gene position: 1665693-1664596 (Counterclockwise)

Preceding gene: 55981748

Following gene: 55981746

Centisome position: 90.05

GC content: 73.68

Gene sequence:

>1098_bases
ATGCGTCCCCGCCTCTCCTTCCTCCTCCTCGCCTTGGCCCTTTTCGCCCTTGGGGGGGTCCTCTCCTGGCCGAGGCCCGC
CGCCCTTCCCACCTCCGCCCCCAAGCGGACGGGCCCGGTGCCGGAGATGGGGGTGGTGGTGGCCGCCCGGGACATTGACT
ACTGCGCCCCCCGCACCCCTTGCGGCCCGGGAAGCCGGACGGACACCATCTTCTACGTCCGCGTCCGCGGGGGGGAGGCC
GTGGGCGTGGCCATCCCCCGGGACCTCTACAGCCCCCTTGTGGGCGGGAGGATCAACGCCGCCTACGGCCGGGGAGGCCC
TGAGCTCTTGAAGCGGGCGGTGGAGGAGGCCACGGGCCTCGTGGCGGAGCGGCACCTCATCTTCACCCTGGAGGGGGTGG
CCCGCGTGGTGGACGCCGTGGGGGGGGTGGAGGTGTACCTGGACCGCCCCATGCGCTACGTGGACCGGGCGGCGAACCTC
TACATTGACTTCCCCGCCGGCAGGCTCCACCTCTCCGGGGAAGAGGCGGTGAAGTACATGCGCTTCCGCCACGACGCCCT
GGGGGACTACGCCCGCCTGGACCGGATCAAGGCCGTGGCCATCCAGGTGGCCCGAAAGGCCCAGGACCCCCGGGTCTGGC
CCGCCCTGGCGGCCGCCCTGCGGGAGGTGTGGCGCGAGCTGGACACCGACCTCAGCCTGGAGGAGGTTCTGGACTACCTC
CCCTACGCCCGGGATTTCCAGGTGGCCCTGGCCACCCTGCCCACGCGGGAGGGGGCGGGCACCTACCTCTACGTGGACGA
GGCGCGCAGGGGGGAGCTTCTTGCCGCCCTTTTCGGGGGGCCGCCCCTCGCCCCGCCCCCCGGCCTCCCGGTGCGCCTGC
GGGGGGACGCCGGGCTCATCGCCTGGGGCCGGGCCTTCCTGGAGCGGGAGGGGGTGGAGGTGCGGACGGAGGAGGCCGAG
GTGGCCCGGAGCGCCGTTTACGCCAGCGACCCGGCGGTGGGCCGCTACTACGCGGGCCTGTTCCACCTTCCCGTCATCGC
CCCCCACCGGCCCTTGGCCGAGGTGGTGGTGGAGCTCGGGCCGGACCTGCTACACTAA

Upstream 100 bases:

>100_bases
AGGAGGCGTACCGCCTGGCGGTGCGGAACAAGGTCCACTACCTCAAGGCCAAGAAGATCCCCATCCACCCCAGGACCCTG
GAGGTCTACCACAGCCTCTG

Downstream 100 bases:

>100_bases
GGGCAGATGGTCAAGGCCAAGGAGGCGGTAGCGCTGATCGAGCGGATCAAGGAGCTCCTCGCGGAAAAGAAGGCGGAAAA
CGTGGTGGCCCTGGACCTGC

Product: LytR/CspA/Psr family protein

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MRPRLSFLLLALALFALGGVLSWPRPAALPTSAPKRTGPVPEMGVVVAARDIDYCAPRTPCGPGSRTDTIFYVRVRGGEA
VGVAIPRDLYSPLVGGRINAAYGRGGPELLKRAVEEATGLVAERHLIFTLEGVARVVDAVGGVEVYLDRPMRYVDRAANL
YIDFPAGRLHLSGEEAVKYMRFRHDALGDYARLDRIKAVAIQVARKAQDPRVWPALAAALREVWRELDTDLSLEEVLDYL
PYARDFQVALATLPTREGAGTYLYVDEARRGELLAALFGGPPLAPPPGLPVRLRGDAGLIAWGRAFLEREGVEVRTEEAE
VARSAVYASDPAVGRYYAGLFHLPVIAPHRPLAEVVVELGPDLLH

Sequences:

>Translated_365_residues
MRPRLSFLLLALALFALGGVLSWPRPAALPTSAPKRTGPVPEMGVVVAARDIDYCAPRTPCGPGSRTDTIFYVRVRGGEA
VGVAIPRDLYSPLVGGRINAAYGRGGPELLKRAVEEATGLVAERHLIFTLEGVARVVDAVGGVEVYLDRPMRYVDRAANL
YIDFPAGRLHLSGEEAVKYMRFRHDALGDYARLDRIKAVAIQVARKAQDPRVWPALAAALREVWRELDTDLSLEEVLDYL
PYARDFQVALATLPTREGAGTYLYVDEARRGELLAALFGGPPLAPPPGLPVRLRGDAGLIAWGRAFLEREGVEVRTEEAE
VARSAVYASDPAVGRYYAGLFHLPVIAPHRPLAEVVVELGPDLLH
>Mature_365_residues
MRPRLSFLLLALALFALGGVLSWPRPAALPTSAPKRTGPVPEMGVVVAARDIDYCAPRTPCGPGSRTDTIFYVRVRGGEA
VGVAIPRDLYSPLVGGRINAAYGRGGPELLKRAVEEATGLVAERHLIFTLEGVARVVDAVGGVEVYLDRPMRYVDRAANL
YIDFPAGRLHLSGEEAVKYMRFRHDALGDYARLDRIKAVAIQVARKAQDPRVWPALAAALREVWRELDTDLSLEEVLDYL
PYARDFQVALATLPTREGAGTYLYVDEARRGELLAALFGGPPLAPPPGLPVRLRGDAGLIAWGRAFLEREGVEVRTEEAE
VARSAVYASDPAVGRYYAGLFHLPVIAPHRPLAEVVVELGPDLLH

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 39754; Mature: 39754

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPRLSFLLLALALFALGGVLSWPRPAALPTSAPKRTGPVPEMGVVVAARDIDYCAPRTP
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
CGPGSRTDTIFYVRVRGGEAVGVAIPRDLYSPLVGGRINAAYGRGGPELLKRAVEEATGL
CCCCCCCCEEEEEEEECCCEEEEECCHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHH
VAERHLIFTLEGVARVVDAVGGVEVYLDRPMRYVDRAANLYIDFPAGRLHLSGEEAVKYM
HHHCEEEEEHHHHHHHHHHHCCEEEEECCHHHHHHHHCCEEEECCCCEEEECHHHHHHHH
RFRHDALGDYARLDRIKAVAIQVARKAQDPRVWPALAAALREVWRELDTDLSLEEVLDYL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHC
PYARDFQVALATLPTREGAGTYLYVDEARRGELLAALFGGPPLAPPPGLPVRLRGDAGLI
CCCCHHHHHEEECCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCH
AWGRAFLEREGVEVRTEEAEVARSAVYASDPAVGRYYAGLFHLPVIAPHRPLAEVVVELG
HHHHHHHHHCCCEEECHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHC
PDLLH
HHHCC
>Mature Secondary Structure
MRPRLSFLLLALALFALGGVLSWPRPAALPTSAPKRTGPVPEMGVVVAARDIDYCAPRTP
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
CGPGSRTDTIFYVRVRGGEAVGVAIPRDLYSPLVGGRINAAYGRGGPELLKRAVEEATGL
CCCCCCCCEEEEEEEECCCEEEEECCHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHH
VAERHLIFTLEGVARVVDAVGGVEVYLDRPMRYVDRAANLYIDFPAGRLHLSGEEAVKYM
HHHCEEEEEHHHHHHHHHHHCCEEEEECCHHHHHHHHCCEEEECCCCEEEECHHHHHHHH
RFRHDALGDYARLDRIKAVAIQVARKAQDPRVWPALAAALREVWRELDTDLSLEEVLDYL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHC
PYARDFQVALATLPTREGAGTYLYVDEARRGELLAALFGGPPLAPPPGLPVRLRGDAGLI
CCCCHHHHHEEECCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCH
AWGRAFLEREGVEVRTEEAEVARSAVYASDPAVGRYYAGLFHLPVIAPHRPLAEVVVELG
HHHHHHHHHCCCEEECHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHC
PDLLH
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721630 [H]