Click here to switch to the map view.

The map label for this gene is 55981680

Identifier: 55981680

GI number: 55981680

Start: 1605650

End: 1607020

Strand: Direct

Name: 55981680

Synonym: TTHA1711

Alternate gene names: NA

Gene position: 1605650-1607020 (Clockwise)

Preceding gene: 55981679

Following gene: 55981682

Centisome position: 86.8

GC content: 71.19

Gene sequence:

>1371_bases
ATGGACCTGGTGAGGCCCCCTCAGGTGGCGGGGTATTTTTACCCCGGGGAAAAGGCGGCCCTGAAGGAGGAGGTGAAAGC
CCTCCTGGCCGGGGCCCGCACCCCGCCCCTACCCGGGGTCCGGGGGGTCCTCTCCCCCCATGCGGGCTACGCCTACGCCG
GCAGGGTGATGGCGGAAGCCTTCCGGGCCCTCTCCGCCTGGCGGGGAAAGGCGAGGCGGGTTTTCCTCCTGGGTCCAAGC
CACTTCGTGGCCTTCCCCGGGGTGGCCTTCTTCCCCTACCGGGCCTGGCGCACCCCCTTGGGGGAGGTGGCGGTGGACCT
GGAGGGGGGGAGGAGGCTTCTCGGCCAAGGAGCGCCCTTTCGCGCCTACCGGGAGCCCTTCCTGGAGGAGCATAGCCTCG
AGGTCCTCCTCCCCTTCCTCCAGGTGGCCCTCCCCCAAACCCCCATCCTCCCCCTCCTCTTCGGGGAGGTGGACCCAGGG
GAGGTGGCGGAGGCCCTCCTCCCGGAACTGGGCCCAAAGGACCTGGTGGTGGCCTCCAGCGACCTCTCCCACTACCACCC
CGACCCCGTGGCCCGGAGGCTGGACGCCAAGACCCTAAAGCGGGCCCTGGCCTTGGACGCCGAGGGGGTGGCCCAAGGGG
AGGCCTGCGGCCGGCTCCCCTGGAGCACCCTCACCGCCTTGGCCCGGGCCCTGGGGTGGAAACCCCGGCTCCTCGCCTAC
GCCACCAGCGCCGAGGCCAGGGGAGGGCGGGAGCGGGTGGTGGGGTATGGAGCCTTGGCCTATGTATGGAGCCTTGGCCT
ATGTAGGATGAAGGAGATGACCCCGGTGCGTCGTCGCTTCAGCGTGGAGGAGTTCCACCGCATGGCCCGGGCGGGCCTCC
TCGGGGAAGACGACCGGGTGGAGCTCCTGGAAGGGGAGATCTGGCAGATGAGCCCCATCGGTAGCCGCCACGCCGCCTGC
CTCCGCCGCCTCCGCCGCCTCTTCACCCCCTTGGAAACCCAAGGCCTATGCCTCCTCGCCGTGCAGGACCCCCTGCGCCT
AAGCCCCCATAGCGAGCCCCAGCCCGACCTCCTCCTCCTCAAGCCCCGGGAGGATCTCTACGCCGAAGCCCACCCGGGCC
CCGAAGACGTCCTCCTCTTGGTGGAGGTGGCCGACGCCTCGGGGGCCTACGACCGGGAGGTGAAGGCCCCCCTCTACGCC
CGGCACGGGGTCCAGGAGGTCTGGGTGGTGGACCTCGTGGAGGGAAGGGTCCACCGCTTCCTGGACCCTTCCCCCGGGGG
CTACCGGGAACACCACGTCCTGGGCCCCGGGGACACCCTCTCCCCCAGGGCCTTCCCCGGGCTCTCCGTGTCCGTGGCCT
CCCTCCTCTAA

Upstream 100 bases:

>100_bases
ACTGCGGCAGGCTCCTGGTGCGCCGGCGGGGCTACCGGGTGGAGGCCCTGTGGGAGGCCCCGGGGGTCTGCCCCGGGTGC
GGCCAGCGCATCCCCGGCGT

Downstream 100 bases:

>100_bases
AGCCGCACCAGGGGCCGGAACCAGGGGACGGAGAGGAGGAGCACCCCCAGGGCCAGGCCGAAAAGAAGCCTGGCCCCGGG
CTTCCCTCTCCGCGCCCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MDLVRPPQVAGYFYPGEKAALKEEVKALLAGARTPPLPGVRGVLSPHAGYAYAGRVMAEAFRALSAWRGKARRVFLLGPS
HFVAFPGVAFFPYRAWRTPLGEVAVDLEGGRRLLGQGAPFRAYREPFLEEHSLEVLLPFLQVALPQTPILPLLFGEVDPG
EVAEALLPELGPKDLVVASSDLSHYHPDPVARRLDAKTLKRALALDAEGVAQGEACGRLPWSTLTALARALGWKPRLLAY
ATSAEARGGRERVVGYGALAYVWSLGLCRMKEMTPVRRRFSVEEFHRMARAGLLGEDDRVELLEGEIWQMSPIGSRHAAC
LRRLRRLFTPLETQGLCLLAVQDPLRLSPHSEPQPDLLLLKPREDLYAEAHPGPEDVLLLVEVADASGAYDREVKAPLYA
RHGVQEVWVVDLVEGRVHRFLDPSPGGYREHHVLGPGDTLSPRAFPGLSVSVASLL

Sequences:

>Translated_456_residues
MDLVRPPQVAGYFYPGEKAALKEEVKALLAGARTPPLPGVRGVLSPHAGYAYAGRVMAEAFRALSAWRGKARRVFLLGPS
HFVAFPGVAFFPYRAWRTPLGEVAVDLEGGRRLLGQGAPFRAYREPFLEEHSLEVLLPFLQVALPQTPILPLLFGEVDPG
EVAEALLPELGPKDLVVASSDLSHYHPDPVARRLDAKTLKRALALDAEGVAQGEACGRLPWSTLTALARALGWKPRLLAY
ATSAEARGGRERVVGYGALAYVWSLGLCRMKEMTPVRRRFSVEEFHRMARAGLLGEDDRVELLEGEIWQMSPIGSRHAAC
LRRLRRLFTPLETQGLCLLAVQDPLRLSPHSEPQPDLLLLKPREDLYAEAHPGPEDVLLLVEVADASGAYDREVKAPLYA
RHGVQEVWVVDLVEGRVHRFLDPSPGGYREHHVLGPGDTLSPRAFPGLSVSVASLL
>Mature_456_residues
MDLVRPPQVAGYFYPGEKAALKEEVKALLAGARTPPLPGVRGVLSPHAGYAYAGRVMAEAFRALSAWRGKARRVFLLGPS
HFVAFPGVAFFPYRAWRTPLGEVAVDLEGGRRLLGQGAPFRAYREPFLEEHSLEVLLPFLQVALPQTPILPLLFGEVDPG
EVAEALLPELGPKDLVVASSDLSHYHPDPVARRLDAKTLKRALALDAEGVAQGEACGRLPWSTLTALARALGWKPRLLAY
ATSAEARGGRERVVGYGALAYVWSLGLCRMKEMTPVRRRFSVEEFHRMARAGLLGEDDRVELLEGEIWQMSPIGSRHAAC
LRRLRRLFTPLETQGLCLLAVQDPLRLSPHSEPQPDLLLLKPREDLYAEAHPGPEDVLLLVEVADASGAYDREVKAPLYA
RHGVQEVWVVDLVEGRVHRFLDPSPGGYREHHVLGPGDTLSPRAFPGLSVSVASLL

Specific function: Unknown

COG id: COG4636

COG function: function code S; Uncharacterized protein conserved in cyanobacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0103 family [H]

Homologues:

Organism=Homo sapiens, GI7705720, Length=291, Percent_Identity=25.7731958762887, Blast_Score=86, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI32566861, Length=245, Percent_Identity=28.5714285714286, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI25146594, Length=245, Percent_Identity=28.5714285714286, Blast_Score=90, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6322467, Length=202, Percent_Identity=27.7227722772277, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21357419, Length=290, Percent_Identity=26.551724137931, Blast_Score=93, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020619
- InterPro:   IPR002737 [H]

Pfam domain/function: PF01875 Memo [H]

EC number: NA

Molecular weight: Translated: 50073; Mature: 50073

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLVRPPQVAGYFYPGEKAALKEEVKALLAGARTPPLPGVRGVLSPHAGYAYAGRVMAEA
CCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
FRALSAWRGKARRVFLLGPSHFVAFPGVAFFPYRAWRTPLGEVAVDLEGGRRLLGQGAPF
HHHHHHHCCCCCEEEEECCCHHHHCCCCHHCCCHHHCCCCCCEEEECCCCHHHHCCCCCC
RAYREPFLEEHSLEVLLPFLQVALPQTPILPLLFGEVDPGEVAEALLPELGPKDLVVASS
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCCCCEEEECC
DLSHYHPDPVARRLDAKTLKRALALDAEGVAQGEACGRLPWSTLTALARALGWKPRLLAY
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEE
ATSAEARGGRERVVGYGALAYVWSLGLCRMKEMTPVRRRFSVEEFHRMARAGLLGEDDRV
ECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHCCCCCCCCC
ELLEGEIWQMSPIGSRHAACLRRLRRLFTPLETQGLCLLAVQDPLRLSPHSEPQPDLLLL
EEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEE
KPREDLYAEAHPGPEDVLLLVEVADASGAYDREVKAPLYARHGVQEVWVVDLVEGRVHRF
CCCHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHH
LDPSPGGYREHHVLGPGDTLSPRAFPGLSVSVASLL
CCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHC
>Mature Secondary Structure
MDLVRPPQVAGYFYPGEKAALKEEVKALLAGARTPPLPGVRGVLSPHAGYAYAGRVMAEA
CCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
FRALSAWRGKARRVFLLGPSHFVAFPGVAFFPYRAWRTPLGEVAVDLEGGRRLLGQGAPF
HHHHHHHCCCCCEEEEECCCHHHHCCCCHHCCCHHHCCCCCCEEEECCCCHHHHCCCCCC
RAYREPFLEEHSLEVLLPFLQVALPQTPILPLLFGEVDPGEVAEALLPELGPKDLVVASS
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCCCCEEEECC
DLSHYHPDPVARRLDAKTLKRALALDAEGVAQGEACGRLPWSTLTALARALGWKPRLLAY
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEE
ATSAEARGGRERVVGYGALAYVWSLGLCRMKEMTPVRRRFSVEEFHRMARAGLLGEDDRV
ECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHCCCCCCCCC
ELLEGEIWQMSPIGSRHAACLRRLRRLFTPLETQGLCLLAVQDPLRLSPHSEPQPDLLLL
EEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEE
KPREDLYAEAHPGPEDVLLLVEVADASGAYDREVKAPLYARHGVQEVWVVDLVEGRVHRF
CCCHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHH
LDPSPGGYREHHVLGPGDTLSPRAFPGLSVSVASLL
CCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA