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The map label for this gene is secY [H]

Identifier: 55981641

GI number: 55981641

Start: 1580817

End: 1582133

Strand: Reverse

Name: secY [H]

Synonym: TTHA1672

Alternate gene names: 55981641

Gene position: 1582133-1580817 (Counterclockwise)

Preceding gene: 55981642

Following gene: 55981640

Centisome position: 85.53

GC content: 66.44

Gene sequence:

>1317_bases
ATGCTCAAGGCCTTCTGGAGCGCCCTGCAGATCCCCGAGCTCCGCCAGCGGGTGCTCTTCACCCTCCTCGTCCTCGCCGC
CTACCGCCTCGGGGCCTTCATCCCCACCCCGGGGGTGGACCTGGACAAGATCCAGGAGTTCCTGCGCACGGCCCAAGGCG
GGGTCTTCGGCATCATCAACCTCTTCTCCGGGGGCAACTTTGAGCGCTTCTCCATCTTCGCCCTGGGCATCATGCCCTAC
ATCACCGCGGCCATCATCATGCAGATCCTGGTCACGGTGGTGCCGGCGCTGGAGAAGCTCTCCAAGGAGGGGGAGGAGGG
GCGGCGCATCATCAACCAGTACACCCGCATCGGGGGCATCGCCCTGGGCGCCTTCCAGGGGTTCTTCCTGGCCACGGCCT
TTTTGGGGGCCGAGGGGGGCCGCTTCCTCCTCCCGGGCTGGTCCCCCGGCCCCTTCTTCTGGTTCGTGGTGGTGGTGACC
CAGGTGGCGGGCATCGCCCTCCTCCTGTGGATGGCGGAGCGCATCACCGAGTACGGCATCGGCAACGGCACGAGCCTCAT
CATCTTCGCCGGGATCGTGGTGGAATGGCTTCCCCAGATCCTGCGCACCATAGGCCTCATCCGCACCGGGGAGGTCAACC
TGGTGGCCTTCCTCTTCTTCCTCGCCTTCATCGTCCTGGCCTTCGCCGGCATGGCCGCCGTCCAGCAGGCCGAGCGCAGG
ATCCCCGTCCAGTACGCCCGCAAGGTGGTGGGGCGCAGGGTCTACGGGGGCCAGGCCACCTACATCCCCATCAAGCTCAA
CGCCGCCGGGGTGATCCCCATCATCTTCGCCGCGGCCATCCTGCAGATCCCCATCTTCCTGGCCGCCCCCTTCCAGGACA
ACCCCGTGCTGCAGGGCATCGCCAACTTCTTCAACCCCACCCGGCCTTCGGGGCTCTTCATAGAGGTCCTCCTCGTCATC
CTCTTCACCTACGTCTACACCGCCGTCCAGTTTGACCCCAAGCGCATCGCCGAGTCGCTGCGGGAGTACGGGGGGTTCAT
CCCGGGGATCCGCCCGGGCGAGCCCACGGTGAAGTTCCTGGAGCATATCGTTTCCCGTCTCACCCTCTGGGGGGCCCTCT
TCCTTGGGCTCGTGACCCTCCTTCCCCAGATCATCCAGAACCTCACCGGCATCCACAGCATCGCCTTCTCAGGCATCGGC
CTCCTCATCGTGGTGGGCGTGGCCTTGGACACCCTGAGGCAGGTGGAGAGCCAGCTCATGCTCAGGAGCTACGAGGGCTT
CCTCTCCCGCGGGCGCCTGCGGGGGCGGAACCGGTAG

Upstream 100 bases:

>100_bases
GAGGCCAAGCCCCTCAAGGTGGTGGCCCACGCCTTCTCCAAGAGCGCCCTAGAGAAGCTGAAGGCCGCGGGCGGGGAGCC
GGTCCTCCTGGAGGCCTGAG

Downstream 100 bases:

>100_bases
GAGGTGGACGTGGGACAGGCGGTGATCTTCCTGGGACCTCCGGGGGCGGGCAAGGGCACCCAGGCCTCGAGGCTCGCCCA
GGAGCTCGGCTTCAAGAAGC

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MLKAFWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPY
ITAAIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVT
QVAGIALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVAFLFFLAFIVLAFAGMAAVQQAERR
IPVQYARKVVGRRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPTRPSGLFIEVLLVI
LFTYVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNLTGIHSIAFSGIG
LLIVVGVALDTLRQVESQLMLRSYEGFLSRGRLRGRNR

Sequences:

>Translated_438_residues
MLKAFWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPY
ITAAIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVT
QVAGIALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVAFLFFLAFIVLAFAGMAAVQQAERR
IPVQYARKVVGRRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPTRPSGLFIEVLLVI
LFTYVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNLTGIHSIAFSGIG
LLIVVGVALDTLRQVESQLMLRSYEGFLSRGRLRGRNR
>Mature_438_residues
MLKAFWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPY
ITAAIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVT
QVAGIALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVAFLFFLAFIVLAFAGMAAVQQAERR
IPVQYARKVVGRRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPTRPSGLFIEVLLVI
LFTYVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNLTGIHSIAFSGIG
LLIVVGVALDTLRQVESQLMLRSYEGFLSRGRLRGRNR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=429, Percent_Identity=40.7925407925408, Blast_Score=297, Evalue=1e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 48205; Mature: 48205

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS00430 TONB_DEPENDENT_REC_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]