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The map label for this gene is (hspc4-1 [H]

Identifier: 55981453

GI number: 55981453

Start: 1410860

End: 1411273

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: TTHA1484

Alternate gene names: 55981453

Gene position: 1411273-1410860 (Counterclockwise)

Preceding gene: 55981454

Following gene: 55981452

Centisome position: 76.3

GC content: 66.67

Gene sequence:

>414_bases
ATGATGCGGTTTGATCCCTTCAAGGAGCTTGAGGAGCTGCAGGAGAGGCTGGTTAGGGCCTTCGGCGCGCCCCAGCAGGG
GCCTAGGGTCTACGCCCCGCCGGTGGACGTGTGGGAGGACGAGGAGGGCCTCCACCTCCTGGTCTACCTGCCGGGCGTGG
AGCCCGAGAAGGTGGAGGTGGTGGCCGAGGAGGGGGTGCTCTCCGTGAAGGCGGAGAGGCCCTTTGAACGCAAGGAGAAC
GCCGCTTACCACCGGCTGGAGGGCACCTACGGCACCTTCGTCCGGAGCTTCAACGTGCCCAGCACCTACGACCTCTCCAA
GGTCCAGGCCCGCTTCCGCCACGGGGTGCTTCACCTCCTGGTGCCGCGGGCCGAGGCCACGAAGCCGAAGAAGATCCAGG
TGCAGGTGGAGTAA

Upstream 100 bases:

>100_bases
CGCCACCAAGCTGGAGTTCGTGCGCGGCGAGGCCGAAAACAGGCTTCTTGAGCGCGGGGGCATGGCCGCGCTCTTGAGGT
GGTGAAGGAGGTGAGGTGGC

Downstream 100 bases:

>100_bases
GGAGGTGAGGCTATGCGGCGCACGGTAAGGTACATCCTCGCCACCTCCAACCCCATGGGGGACCTGGAGGCGCTGGAGAA
GTTCGTCAAGCTGGCCCCCG

Product: heat shock protein 20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MMRFDPFKELEELQERLVRAFGAPQQGPRVYAPPVDVWEDEEGLHLLVYLPGVEPEKVEVVAEEGVLSVKAERPFERKEN
AAYHRLEGTYGTFVRSFNVPSTYDLSKVQARFRHGVLHLLVPRAEATKPKKIQVQVE

Sequences:

>Translated_137_residues
MMRFDPFKELEELQERLVRAFGAPQQGPRVYAPPVDVWEDEEGLHLLVYLPGVEPEKVEVVAEEGVLSVKAERPFERKEN
AAYHRLEGTYGTFVRSFNVPSTYDLSKVQARFRHGVLHLLVPRAEATKPKKIQVQVE
>Mature_137_residues
MMRFDPFKELEELQERLVRAFGAPQQGPRVYAPPVDVWEDEEGLHLLVYLPGVEPEKVEVVAEEGVLSVKAERPFERKEN
AAYHRLEGTYGTFVRSFNVPSTYDLSKVQARFRHGVLHLLVPRAEATKPKKIQVQVE

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 15743; Mature: 15743

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRFDPFKELEELQERLVRAFGAPQQGPRVYAPPVDVWEDEEGLHLLVYLPGVEPEKVEV
CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCCEEE
VAEEGVLSVKAERPFERKENAAYHRLEGTYGTFVRSFNVPSTYDLSKVQARFRHGVLHLL
EECCCEEEEECCCCCCCCCCCHHEECCCCHHHHEEECCCCCCCCHHHHHHHHHHCEEEEE
VPRAEATKPKKIQVQVE
ECCCCCCCCCEEEEEEC
>Mature Secondary Structure
MMRFDPFKELEELQERLVRAFGAPQQGPRVYAPPVDVWEDEEGLHLLVYLPGVEPEKVEV
CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCCEEE
VAEEGVLSVKAERPFERKENAAYHRLEGTYGTFVRSFNVPSTYDLSKVQARFRHGVLHLL
EECCCEEEEECCCCCCCCCCCHHEECCCCHHHHEEECCCCCCCCHHHHHHHHHHCEEEEE
VPRAEATKPKKIQVQVE
ECCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA