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The map label for this gene is 55981443

Identifier: 55981443

GI number: 55981443

Start: 1404711

End: 1405343

Strand: Reverse

Name: 55981443

Synonym: TTHA1474

Alternate gene names: NA

Gene position: 1405343-1404711 (Counterclockwise)

Preceding gene: 55981444

Following gene: 55981442

Centisome position: 75.98

GC content: 67.93

Gene sequence:

>633_bases
ATGATCCCCCTGCACGACATCAACCCCGCGCGCCGCCCCGCCCTGGTGGTCCGGTCCCTGGTGGTCCTGAACGTGGCCGC
CTTTCTCCTGGAGCTCCTTCTTGGGCCCACCCAGGTGGTGGCCAAGATGGGCTTCGTCCCCGCCCTTTTCTTCCAAGACC
CCCTGGGCGAGGGTTACCGGATCCTCACCAGCATGTTCCTCCACGGGGGGCTTTTCCACCTCCTCTCCAACATGTGGTTC
CTGTGGGTGTTCGGGGACAACGTGGAGGACCGGATGGGAGGGGAGCGGTTCCTCCTCTTCTACCTCCTCGGCGGGGTGGC
GGCGGCCCTGGCCCAGGCCCTGTTCATGCCCGCCTCCACCGTGCCCATGATCGGGGCGAGCGGGGCGGTCTCCGCTGTCC
TTGGGGCCTATTACGTCCTCTTCCCCCGGGCCTACGTGATCACCCTGGTCTGGTTCGTCCTGCCCTTCACCCTGGCCCTG
CCCGCGGGCTTTTACCTGGGGTACTGGGCCTTCCTCCAGCTGGTGCAGGGGCTTTTGGGCGTGCCGGGCATCGCCTTCTG
GGCCCACCTCGGCGGGTTCGTCTTCGGCGTGGCGGCGGTGCGGGCGTTCCTTCCCCGAAGGTGGCGCTGGTAG

Upstream 100 bases:

>100_bases
CTATAGAGGTCTACGAGCTCATGGAGCTCTACCCTCAAGCCCAAGGCCAGAGGCCCAGCGTCCAGTACGTGCCCCTGCCC
TACCGCCAGGGTCCGCCGCG

Downstream 100 bases:

>100_bases
ACTGGGGCCCATGAAGGTCAAGGACCTGATGACCCAAGACCCCGTGGTCCTGGGGCCGGAGGCCACTTTGGAGGAGGCCG
CCCGCAGGATCCTGGAGACC

Product: hypothetical protein

Products: NA

Alternate protein names: Peptidase; Rhomboid-Like Protein; Integral Membrane Protein; S54 Family Peptidase; Rhomboid Serine Protease; Rhomboid Family Membrane Protein; Membrane Associated Serine Protease; Integral Membrane Rhomboid Family Protein; Regulatory Proteins IclR

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MIPLHDINPARRPALVVRSLVVLNVAAFLLELLLGPTQVVAKMGFVPALFFQDPLGEGYRILTSMFLHGGLFHLLSNMWF
LWVFGDNVEDRMGGERFLLFYLLGGVAAALAQALFMPASTVPMIGASGAVSAVLGAYYVLFPRAYVITLVWFVLPFTLAL
PAGFYLGYWAFLQLVQGLLGVPGIAFWAHLGGFVFGVAAVRAFLPRRWRW

Sequences:

>Translated_210_residues
MIPLHDINPARRPALVVRSLVVLNVAAFLLELLLGPTQVVAKMGFVPALFFQDPLGEGYRILTSMFLHGGLFHLLSNMWF
LWVFGDNVEDRMGGERFLLFYLLGGVAAALAQALFMPASTVPMIGASGAVSAVLGAYYVLFPRAYVITLVWFVLPFTLAL
PAGFYLGYWAFLQLVQGLLGVPGIAFWAHLGGFVFGVAAVRAFLPRRWRW
>Mature_210_residues
MIPLHDINPARRPALVVRSLVVLNVAAFLLELLLGPTQVVAKMGFVPALFFQDPLGEGYRILTSMFLHGGLFHLLSNMWF
LWVFGDNVEDRMGGERFLLFYLLGGVAAALAQALFMPASTVPMIGASGAVSAVLGAYYVLFPRAYVITLVWFVLPFTLAL
PAGFYLGYWAFLQLVQGLLGVPGIAFWAHLGGFVFGVAAVRAFLPRRWRW

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI133901888, Length=168, Percent_Identity=27.9761904761905, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI115532986, Length=168, Percent_Identity=27.9761904761905, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115534507, Length=158, Percent_Identity=31.0126582278481, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23150; Mature: 23150

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPLHDINPARRPALVVRSLVVLNVAAFLLELLLGPTQVVAKMGFVPALFFQDPLGEGYR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHH
ILTSMFLHGGLFHLLSNMWFLWVFGDNVEDRMGGERFLLFYLLGGVAAALAQALFMPAST
HHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
VPMIGASGAVSAVLGAYYVLFPRAYVITLVWFVLPFTLALPAGFYLGYWAFLQLVQGLLG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VPGIAFWAHLGGFVFGVAAVRAFLPRRWRW
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIPLHDINPARRPALVVRSLVVLNVAAFLLELLLGPTQVVAKMGFVPALFFQDPLGEGYR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHH
ILTSMFLHGGLFHLLSNMWFLWVFGDNVEDRMGGERFLLFYLLGGVAAALAQALFMPAST
HHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
VPMIGASGAVSAVLGAYYVLFPRAYVITLVWFVLPFTLALPAGFYLGYWAFLQLVQGLLG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VPGIAFWAHLGGFVFGVAAVRAFLPRRWRW
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA