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The map label for this gene is ccmF [H]

Identifier: 55981373

GI number: 55981373

Start: 1336259

End: 1338190

Strand: Reverse

Name: ccmF [H]

Synonym: TTHA1404

Alternate gene names: 55981373

Gene position: 1338190-1336259 (Counterclockwise)

Preceding gene: 55981374

Following gene: 55981372

Centisome position: 72.34

GC content: 69.1

Gene sequence:

>1932_bases
ATGACCCCGGCCCTTCTCGGCAACCTCGGCGTGAGCCTGGCCCTGGCCTTTAGCCTCCTGGGCCTGGGCCTCGCCCTCCT
CGCCTACCTCCAGGGGGACGGGCGCTTCCTAAGGGGGGCGCGGGCCCTCGTGTTTCCTGCCTTCCTCGCTGCGCTTGCCG
CCTTCCTCGCCTTGGAGTGGGCCCTTCTCGTCCACGACTTCAGCCTGGCCTACGTGGCGAGGAACCACTCCACCAAGGAC
CCCCTCTGGGTGACCCTGGTGACCCCGTGGGCGGCCCTCGAGGGCAGCATCCTCCTCTGGGGCCTCCTCCAGACCCTCTA
CACCCTGCTCGCCAGCCGCAAGCCCTTGGACCCCTGGCGGGCCTCCCTGGTCCTCGCCGTGCTCTTCGGCATCCAGGTCT
TCTTCTTCGGGGTCATGGCCACCATCGCGAGCCCCTTTGAGACCCTGCCCGACCCGCCTCCCGACGGCGTGGGCCCGAAC
CCCCTCCTCCAGAACCACTGGATGATGGCCGTCCACCCCGTCCTCATGTACCTGGGTTTCGTGGGCCTGAGCGTGCCCTA
CGCCTACGCGGTGGCGGCCATGGCCACCCGGCGCTACCAGACCTGGGTGGAGGAGACCAGGTGGTGGACCCTCATCGCCT
GGGGCTTCCTCACCGCGGGGAAGGTGGCGGGGATGTGGTGGAGCTACGAGGTCCTGGGCTGGGGCGGGTACTGGGCCTGG
GACCCGGTGGAGAACGCCAGCTTCATCCCCTGGCTCCTCGCCACGGCCTTCCTCCACACGGCCTTCGTCCAGCAGACCCG
GGGGGCCTTCAAGACCTGGAACTTTGCCTTCGTGACCCTGGCCTTCGCCGCCACCCTTCTCGGCACCTTCCTCACCCGAA
GCGGGGTCATCCAGTCGGTCCACGCCTTCGCCGAGGGCCCCGTGGGGCCTGCCTTCCTCGGCTTCTTCCTCTTTGCCACG
GGCCTTGGCCTCGGCCTCCTCTCCCGGGTCTCCCGGGAGGTGCGGGACACCGCCCTTTTCCACCCCCTCTCCCGGGAGGG
GGCGCTTCTCCTCGGGGCCTTCTTCTTCGCGGGCTGGGCCCTCGTGGTCGTCCTCGGCACCTTCTACCCCCTTCTTGTGG
AGGCCTTCACCGGGGCCAAGGTGAGCGTGGGGGCCCCCTTCTTCAACCAGGTTTCCGCCCCCCTGGGGGCGGGGATCCTC
CTCCTCATGGGGGTGGGGCCCCTCCTCCCCTGGCGCAGGGCCCGGGGGGAGGTTTTGCGGAACCTCCTCGTCCTTCTCCT
CGCCCTCGCCTTGGGGACCCTATTCGGCCTCCTCCGGGGCTACACCTTGGGGGCCTCCTTCGCCTTGGGGCTCTTCCTCT
ACAACGCCGCCGCCATCTACCTCCTGGCGCGGGAGGGGGTTTTGGCCCGGGTGCGGGCGGGGCTTTCCCCCTGGGGCTTC
TTGGCGAACCGCAGGCGGGTGGGAAGCCTCGTGGTCCACTTCGCCGTGGCCCTCATGGGGCTTGCCATCGCCTTCAGCCA
GACCTACCGCCTGGAGAGCGAGAAGACCCTCTACCGGGGAGAGGCCTGGGAGGTGGGGGGCGTGCGCATGACCTTCCAGG
GGGTGCGGGCCTTGGACGAGGGGCGGCGCTTCGCCGTGGAGGCCCTTCTAGAGACCGACCGCTTCGGGGAGGTCAGGCCC
AGGCTCCACTTCTACCCCCAGATGAATAGCCCCCTTCCCGCCCCCAAGGTCATTTACACCCCGGGGAACGACTACTACTT
CCTCCTCATGGACTTTGACCGGGAAAAGGGGGAGTGGGCCTCCCTAAGGCTCATCGTCACCCCCTTGGTCTTCTGGATGT
GGGTGGCGGGGGGGCTCATGGCCCTGGGCACCCTTTACATCCTCTGGCCCGCGGCGAGGCCGGAGGAAGCTAGGGGGGTG
AGCCCGGCGTGA

Upstream 100 bases:

>100_bases
TCCAGGGCACCAACCTCTTGGTGAAGCACTCGGAGACCTACCAGCCCCCCAAGGAAGGCTGGACCCCGGAGGAGGTGCGC
AAGCTCATTGAGGAGGCCCA

Downstream 100 bases:

>100_bases
GGGGGTGGCTCTGGCTCCTCGTGGTATTGGCCCTGGGAGGGCTTTTCTGGTGGGGGATGCAGCGGAACCCCGAGGAGCTC
CCCTCCGTCCTGGCCAAGGA

Product: cytochrome C biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 643; Mature: 642

Protein sequence:

>643_residues
MTPALLGNLGVSLALAFSLLGLGLALLAYLQGDGRFLRGARALVFPAFLAALAAFLALEWALLVHDFSLAYVARNHSTKD
PLWVTLVTPWAALEGSILLWGLLQTLYTLLASRKPLDPWRASLVLAVLFGIQVFFFGVMATIASPFETLPDPPPDGVGPN
PLLQNHWMMAVHPVLMYLGFVGLSVPYAYAVAAMATRRYQTWVEETRWWTLIAWGFLTAGKVAGMWWSYEVLGWGGYWAW
DPVENASFIPWLLATAFLHTAFVQQTRGAFKTWNFAFVTLAFAATLLGTFLTRSGVIQSVHAFAEGPVGPAFLGFFLFAT
GLGLGLLSRVSREVRDTALFHPLSREGALLLGAFFFAGWALVVVLGTFYPLLVEAFTGAKVSVGAPFFNQVSAPLGAGIL
LLMGVGPLLPWRRARGEVLRNLLVLLLALALGTLFGLLRGYTLGASFALGLFLYNAAAIYLLAREGVLARVRAGLSPWGF
LANRRRVGSLVVHFAVALMGLAIAFSQTYRLESEKTLYRGEAWEVGGVRMTFQGVRALDEGRRFAVEALLETDRFGEVRP
RLHFYPQMNSPLPAPKVIYTPGNDYYFLLMDFDREKGEWASLRLIVTPLVFWMWVAGGLMALGTLYILWPAARPEEARGV
SPA

Sequences:

>Translated_643_residues
MTPALLGNLGVSLALAFSLLGLGLALLAYLQGDGRFLRGARALVFPAFLAALAAFLALEWALLVHDFSLAYVARNHSTKD
PLWVTLVTPWAALEGSILLWGLLQTLYTLLASRKPLDPWRASLVLAVLFGIQVFFFGVMATIASPFETLPDPPPDGVGPN
PLLQNHWMMAVHPVLMYLGFVGLSVPYAYAVAAMATRRYQTWVEETRWWTLIAWGFLTAGKVAGMWWSYEVLGWGGYWAW
DPVENASFIPWLLATAFLHTAFVQQTRGAFKTWNFAFVTLAFAATLLGTFLTRSGVIQSVHAFAEGPVGPAFLGFFLFAT
GLGLGLLSRVSREVRDTALFHPLSREGALLLGAFFFAGWALVVVLGTFYPLLVEAFTGAKVSVGAPFFNQVSAPLGAGIL
LLMGVGPLLPWRRARGEVLRNLLVLLLALALGTLFGLLRGYTLGASFALGLFLYNAAAIYLLAREGVLARVRAGLSPWGF
LANRRRVGSLVVHFAVALMGLAIAFSQTYRLESEKTLYRGEAWEVGGVRMTFQGVRALDEGRRFAVEALLETDRFGEVRP
RLHFYPQMNSPLPAPKVIYTPGNDYYFLLMDFDREKGEWASLRLIVTPLVFWMWVAGGLMALGTLYILWPAARPEEARGV
SPA
>Mature_642_residues
TPALLGNLGVSLALAFSLLGLGLALLAYLQGDGRFLRGARALVFPAFLAALAAFLALEWALLVHDFSLAYVARNHSTKDP
LWVTLVTPWAALEGSILLWGLLQTLYTLLASRKPLDPWRASLVLAVLFGIQVFFFGVMATIASPFETLPDPPPDGVGPNP
LLQNHWMMAVHPVLMYLGFVGLSVPYAYAVAAMATRRYQTWVEETRWWTLIAWGFLTAGKVAGMWWSYEVLGWGGYWAWD
PVENASFIPWLLATAFLHTAFVQQTRGAFKTWNFAFVTLAFAATLLGTFLTRSGVIQSVHAFAEGPVGPAFLGFFLFATG
LGLGLLSRVSREVRDTALFHPLSREGALLLGAFFFAGWALVVVLGTFYPLLVEAFTGAKVSVGAPFFNQVSAPLGAGILL
LMGVGPLLPWRRARGEVLRNLLVLLLALALGTLFGLLRGYTLGASFALGLFLYNAAAIYLLAREGVLARVRAGLSPWGFL
ANRRRVGSLVVHFAVALMGLAIAFSQTYRLESEKTLYRGEAWEVGGVRMTFQGVRALDEGRRFAVEALLETDRFGEVRPR
LHFYPQMNSPLPAPKVIYTPGNDYYFLLMDFDREKGEWASLRLIVTPLVFWMWVAGGLMALGTLYILWPAARPEEARGVS
PA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=652, Percent_Identity=35.8895705521472, Blast_Score=309, Evalue=5e-85,
Organism=Escherichia coli, GI1790511, Length=364, Percent_Identity=35.7142857142857, Blast_Score=172, Evalue=8e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 70609; Mature: 70478

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPALLGNLGVSLALAFSLLGLGLALLAYLQGDGRFLRGARALVFPAFLAALAAFLALEW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLVHDFSLAYVARNHSTKDPLWVTLVTPWAALEGSILLWGLLQTLYTLLASRKPLDPWR
HHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHH
ASLVLAVLFGIQVFFFGVMATIASPFETLPDPPPDGVGPNPLLQNHWMMAVHPVLMYLGF
HHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH
VGLSVPYAYAVAAMATRRYQTWVEETRWWTLIAWGFLTAGKVAGMWWSYEVLGWGGYWAW
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCEECC
DPVENASFIPWLLATAFLHTAFVQQTRGAFKTWNFAFVTLAFAATLLGTFLTRSGVIQSV
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HAFAEGPVGPAFLGFFLFATGLGLGLLSRVSREVRDTALFHPLSREGALLLGAFFFAGWA
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LVVVLGTFYPLLVEAFTGAKVSVGAPFFNQVSAPLGAGILLLMGVGPLLPWRRARGEVLR
HHHHHHHHHHHHHHHHCCCEEEECCCHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
NLLVLLLALALGTLFGLLRGYTLGASFALGLFLYNAAAIYLLAREGVLARVRAGLSPWGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHH
LANRRRVGSLVVHFAVALMGLAIAFSQTYRLESEKTLYRGEAWEVGGVRMTFQGVRALDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEECCCEEEHHHHHHHHHH
GRRFAVEALLETDRFGEVRPRLHFYPQMNSPLPAPKVIYTPGNDYYFLLMDFDREKGEWA
HHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCHH
SLRLIVTPLVFWMWVAGGLMALGTLYILWPAARPEEARGVSPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHCCCCCCC
>Mature Secondary Structure 
TPALLGNLGVSLALAFSLLGLGLALLAYLQGDGRFLRGARALVFPAFLAALAAFLALEW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLVHDFSLAYVARNHSTKDPLWVTLVTPWAALEGSILLWGLLQTLYTLLASRKPLDPWR
HHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHH
ASLVLAVLFGIQVFFFGVMATIASPFETLPDPPPDGVGPNPLLQNHWMMAVHPVLMYLGF
HHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH
VGLSVPYAYAVAAMATRRYQTWVEETRWWTLIAWGFLTAGKVAGMWWSYEVLGWGGYWAW
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCEECC
DPVENASFIPWLLATAFLHTAFVQQTRGAFKTWNFAFVTLAFAATLLGTFLTRSGVIQSV
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HAFAEGPVGPAFLGFFLFATGLGLGLLSRVSREVRDTALFHPLSREGALLLGAFFFAGWA
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LVVVLGTFYPLLVEAFTGAKVSVGAPFFNQVSAPLGAGILLLMGVGPLLPWRRARGEVLR
HHHHHHHHHHHHHHHHCCCEEEECCCHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
NLLVLLLALALGTLFGLLRGYTLGASFALGLFLYNAAAIYLLAREGVLARVRAGLSPWGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHH
LANRRRVGSLVVHFAVALMGLAIAFSQTYRLESEKTLYRGEAWEVGGVRMTFQGVRALDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEECCCEEEHHHHHHHHHH
GRRFAVEALLETDRFGEVRPRLHFYPQMNSPLPAPKVIYTPGNDYYFLLMDFDREKGEWA
HHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCHH
SLRLIVTPLVFWMWVAGGLMALGTLYILWPAARPEEARGVSPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]