Click here to switch to the map view.

The map label for this gene is dppC [H]

Identifier: 55981307

GI number: 55981307

Start: 1277768

End: 1278787

Strand: Direct

Name: dppC [H]

Synonym: TTHA1338

Alternate gene names: 55981307

Gene position: 1277768-1278787 (Clockwise)

Preceding gene: 55981306

Following gene: 55981308

Centisome position: 69.08

GC content: 67.06

Gene sequence:

>1020_bases
ATGACTAGGCCTTGGCGCCGCTTTTGGAAAAACCGCCTGTCCCAGGCCGGCCTCCTCCTCCTTGGCCTTTACCTTCTCGG
AGCCCTCTTTGCCCCCTTCCTGGCCCCCTATTCCCCCTACACGCAAGACCTGCGCTCCGCCTACGTGCCTCCCCTCGCCG
GAATAAGCCTAAGGGGCCCCCAAGGGGAATGGGGCCTCTACGTAAGCCCCGTCTACCGGCATCCACTGGAAGGCGTCCAG
GTCCGGTGGGAGGAAAAGTATCCGGTGCGCTTCCTGGTTCGGGGAGAGGCCTGGTCCTGGCTCGGCATCGAAGGGAACCT
CCACCTCTTCGGGGTGGAAGGCCCCGCAAGGCTCTACCTCTTAGGCACCGACGAGCAGGGGCGGGACCTGTTTTCCCGCA
TCCTCTACGGCATTCCCGTCTCCCTCACCATCGGCTTGGTGGCCGTAGGGATAGGCCTACTGGTGGGCGTTCCCTTGGGC
GCCCTCTCCGCCTACTTCGGCGGCTGGATAGACCTCCTGGTGCAGCGGCTGGTGGATGTGATGCTGGCCTTCCCTGGGAT
CCTTCTGGCCATTGTGCTGGTGGCCATCCTGGGGCCGGGCTTGGGCAACGCCATGGTGGCCGTGGGCATCGCCGCCATCC
CCATCTACGCCCGCCTGGTGCGGGGGGTCGTTCTCTCCCTGAAGGCGTTGGACTACGTGGAGGCGGCCAGGGCCTTGGGC
GCAAGCCACGGCCGCATCCTCCTCCGCCACCTCCTGCCCAACGCCCTGGGTCCCCTCCTCATCCAGACCAGCCTGCAGAT
GGCGGTGGCCATTCTCTTCGCCGCCGGGCTCGGCTTCCTGGGCCTTGGGGCTAGGCCTCCGGAGCCGGAATGGGGCCTCA
TGCTGGCCCGGGGCCGGGAATACCTAGCCGTGGCTCCCCACGTGGCCACCTTTCCCGGACTTGCCATCGTGGGCCTCGTC
CTCGCCTTCAACCTCCTGGGAGACGGCCTCCGGGACGCCCTGGACCCCAGGAGCCGCTAA

Upstream 100 bases:

>100_bases
CCCGTGGTCCAGGGCGCGGTACTCCTCGTAGCCTTCACCTTTACCTTGGTCAACCTTATGGTGGACCTCCTTTACGCCTG
GATTGATCCGAGGGTGCGCT

Downstream 100 bases:

>100_bases
AGGGAACCTCAACGGAAGGCGAGGGGCGAAGGGGTATCATGGGGCCATGAGGAAAGGTCTTCTCGCGGCGCTCCTCCTCC
TTTCCGCCTGCCAGGTGCTG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MTRPWRRFWKNRLSQAGLLLLGLYLLGALFAPFLAPYSPYTQDLRSAYVPPLAGISLRGPQGEWGLYVSPVYRHPLEGVQ
VRWEEKYPVRFLVRGEAWSWLGIEGNLHLFGVEGPARLYLLGTDEQGRDLFSRILYGIPVSLTIGLVAVGIGLLVGVPLG
ALSAYFGGWIDLLVQRLVDVMLAFPGILLAIVLVAILGPGLGNAMVAVGIAAIPIYARLVRGVVLSLKALDYVEAARALG
ASHGRILLRHLLPNALGPLLIQTSLQMAVAILFAAGLGFLGLGARPPEPEWGLMLARGREYLAVAPHVATFPGLAIVGLV
LAFNLLGDGLRDALDPRSR

Sequences:

>Translated_339_residues
MTRPWRRFWKNRLSQAGLLLLGLYLLGALFAPFLAPYSPYTQDLRSAYVPPLAGISLRGPQGEWGLYVSPVYRHPLEGVQ
VRWEEKYPVRFLVRGEAWSWLGIEGNLHLFGVEGPARLYLLGTDEQGRDLFSRILYGIPVSLTIGLVAVGIGLLVGVPLG
ALSAYFGGWIDLLVQRLVDVMLAFPGILLAIVLVAILGPGLGNAMVAVGIAAIPIYARLVRGVVLSLKALDYVEAARALG
ASHGRILLRHLLPNALGPLLIQTSLQMAVAILFAAGLGFLGLGARPPEPEWGLMLARGREYLAVAPHVATFPGLAIVGLV
LAFNLLGDGLRDALDPRSR
>Mature_338_residues
TRPWRRFWKNRLSQAGLLLLGLYLLGALFAPFLAPYSPYTQDLRSAYVPPLAGISLRGPQGEWGLYVSPVYRHPLEGVQV
RWEEKYPVRFLVRGEAWSWLGIEGNLHLFGVEGPARLYLLGTDEQGRDLFSRILYGIPVSLTIGLVAVGIGLLVGVPLGA
LSAYFGGWIDLLVQRLVDVMLAFPGILLAIVLVAILGPGLGNAMVAVGIAAIPIYARLVRGVVLSLKALDYVEAARALGA
SHGRILLRHLLPNALGPLLIQTSLQMAVAILFAAGLGFLGLGARPPEPEWGLMLARGREYLAVAPHVATFPGLAIVGLVL
AFNLLGDGLRDALDPRSR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=227, Percent_Identity=51.9823788546256, Blast_Score=234, Evalue=7e-63,
Organism=Escherichia coli, GI1787760, Length=224, Percent_Identity=47.3214285714286, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1789964, Length=227, Percent_Identity=51.5418502202643, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1789889, Length=224, Percent_Identity=37.9464285714286, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI1787498, Length=221, Percent_Identity=39.8190045248869, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI1787549, Length=216, Percent_Identity=39.8148148148148, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1788505, Length=344, Percent_Identity=30.8139534883721, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36570; Mature: 36439

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPWRRFWKNRLSQAGLLLLGLYLLGALFAPFLAPYSPYTQDLRSAYVPPLAGISLRGP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEECCC
QGEWGLYVSPVYRHPLEGVQVRWEEKYPVRFLVRGEAWSWLGIEGNLHLFGVEGPARLYL
CCCCCEEECHHHHCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCEEEEECCCCEEEEE
LGTDEQGRDLFSRILYGIPVSLTIGLVAVGIGLLVGVPLGALSAYFGGWIDLLVQRLVDV
EECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
MLAFPGILLAIVLVAILGPGLGNAMVAVGIAAIPIYARLVRGVVLSLKALDYVEAARALG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ASHGRILLRHLLPNALGPLLIQTSLQMAVAILFAAGLGFLGLGARPPEPEWGLMLARGRE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCC
YLAVAPHVATFPGLAIVGLVLAFNLLGDGLRDALDPRSR
EEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TRPWRRFWKNRLSQAGLLLLGLYLLGALFAPFLAPYSPYTQDLRSAYVPPLAGISLRGP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEECCC
QGEWGLYVSPVYRHPLEGVQVRWEEKYPVRFLVRGEAWSWLGIEGNLHLFGVEGPARLYL
CCCCCEEECHHHHCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCEEEEECCCCEEEEE
LGTDEQGRDLFSRILYGIPVSLTIGLVAVGIGLLVGVPLGALSAYFGGWIDLLVQRLVDV
EECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
MLAFPGILLAIVLVAILGPGLGNAMVAVGIAAIPIYARLVRGVVLSLKALDYVEAARALG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ASHGRILLRHLLPNALGPLLIQTSLQMAVAILFAAGLGFLGLGARPPEPEWGLMLARGRE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCC
YLAVAPHVATFPGLAIVGLVLAFNLLGDGLRDALDPRSR
EEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]