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The map label for this gene is ybeY [C]

Identifier: 55981014

GI number: 55981014

Start: 990664

End: 991083

Strand: Reverse

Name: ybeY [C]

Synonym: TTHA1045

Alternate gene names: 55981014

Gene position: 991083-990664 (Counterclockwise)

Preceding gene: 55981015

Following gene: 55981013

Centisome position: 53.58

GC content: 70.24

Gene sequence:

>420_bases
GTGGTGGAGGTGGTGCGCAATAAGCGCCCTCCCCGGGGGCTTGTCCCTAGGCTCAGGCGGGCCCTGGCCGCCCTCATGGA
GGAGCTCGGCGTGGGGGACAAGGGGGTCACGGTGATCCTCACCGGGGACCGCCGCCTTCGCGCCCTGAAGCGGGAGTGGT
GGGGGGAGGACGAGGCCACGGACGTCCTCTCCTTCCCCCACTACGAGCCGGGGGACCCCTTCGTTCCCCCCCACCTCGGG
GACATCTGGATCAGCCTGGACACCGCGAGGAGGCAGGCCGAGGCCCGGGGAGCCTCCTTGGAGGAGGAGGTCCTGGTCCT
CGCCGCCCACGGGCTTTGGCACCTCCTCGGCCACGACCATCAGAAGGAGGAGGATTGGGAGGGGTTCCGCCGCGTCCAAG
AGAGGATCCTCGCCCTCTAA

Upstream 100 bases:

>100_bases
AAGGGCATAGAGGGGATCGCCTTCGTCCACTTCAAGGAGTCGGACGTGGTGCGCCACCCCTTGGTGGCCCGCATCATCAA
GGCCTACGAGGAGGCGGAGC

Downstream 100 bases:

>100_bases
AAGGGGTCCTCCGGTCCTTCGGCTACGCGTGGGAGGGCCTCGCCTACGCCTGGCGGGTCCAGCGGAACTTCCGGGTGGAG
GTGGCCTTGGGCCTCCTCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MVEVVRNKRPPRGLVPRLRRALAALMEELGVGDKGVTVILTGDRRLRALKREWWGEDEATDVLSFPHYEPGDPFVPPHLG
DIWISLDTARRQAEARGASLEEEVLVLAAHGLWHLLGHDHQKEEDWEGFRRVQERILAL

Sequences:

>Translated_139_residues
MVEVVRNKRPPRGLVPRLRRALAALMEELGVGDKGVTVILTGDRRLRALKREWWGEDEATDVLSFPHYEPGDPFVPPHLG
DIWISLDTARRQAEARGASLEEEVLVLAAHGLWHLLGHDHQKEEDWEGFRRVQERILAL
>Mature_139_residues
MVEVVRNKRPPRGLVPRLRRALAALMEELGVGDKGVTVILTGDRRLRALKREWWGEDEATDVLSFPHYEPGDPFVPPHLG
DIWISLDTARRQAEARGASLEEEVLVLAAHGLWHLLGHDHQKEEDWEGFRRVQERILAL

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_THET2 (Q72JT5)

Other databases:

- EMBL:   AE017221
- RefSeq:   YP_004658.1
- ProteinModelPortal:   Q72JT5
- SMR:   Q72JT5
- STRING:   Q72JT5
- GeneID:   2775465
- GenomeReviews:   AE017221_GR
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   ELAIMLT
- ProtClustDB:   CLSK445403
- BioCyc:   TTHE262724:TT_C0683-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 15894; Mature: 15894

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEVVRNKRPPRGLVPRLRRALAALMEELGVGDKGVTVILTGDRRLRALKREWWGEDEAT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCCH
DVLSFPHYEPGDPFVPPHLGDIWISLDTARRQAEARGASLEEEVLVLAAHGLWHLLGHDH
HHHCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
QKEEDWEGFRRVQERILAL
CCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVEVVRNKRPPRGLVPRLRRALAALMEELGVGDKGVTVILTGDRRLRALKREWWGEDEAT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCCH
DVLSFPHYEPGDPFVPPHLGDIWISLDTARRQAEARGASLEEEVLVLAAHGLWHLLGHDH
HHHCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
QKEEDWEGFRRVQERILAL
CCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA