| Definition | Thermus thermophilus HB8 chromosome, complete genome. |
|---|---|
| Accession | NC_006461 |
| Length | 1,849,742 |
Click here to switch to the map view.
The map label for this gene is 55980962
Identifier: 55980962
GI number: 55980962
Start: 937895
End: 938902
Strand: Direct
Name: 55980962
Synonym: TTHA0993
Alternate gene names: NA
Gene position: 937895-938902 (Clockwise)
Preceding gene: 55980960
Following gene: 55980963
Centisome position: 50.7
GC content: 73.12
Gene sequence:
>1008_bases ATGCGCCTATTATGGAGGGAAATGCGCCCCTTCCGGACCGCCTGGCTCGCCCTCCTCCTCGCGGCCTGCGCCCCCGCCCT CCTCGCCGTGGACCCGGGCCGCCTCCCCGAGCCCGAGGACTGGGACCCCAAGCCCGCCCAGCTGGAGTGGTGGTACGCCT CGGGGTGGGTGGAGCCCTACGCCTTCCACTTCGCCTTCTTCAAGGCCTACGCCCCGCCCTCCTACCGCATCCTGGGCCTC CCCGGGAGCCTCTTCGGGCCCTTCCACGCCGCCCACCTCGCCCTCACCGACCTCCGCACCGGGAAGCGGCGCTTTCTGGA GGTGGCGGACCAGGACCTCTTCGCCAAGAGGGGCGAGGCCCTGCCCGGCCCGCGGCTGGCCCTCATGGGGTGGCGGTTTT ACCGGGAGGGGGAGGGGTTCCGCCTCGAGGCGCCGGGCGTGGACCTCCGCTTCCGTCCCCTGAAGCCTCCCGTGGTCCAC CCCCCCTCGGGCACCGCGGAGACGGGGCGGATGCACTACCAGTCCTACACCAGGGTCGCCGCCTGGGGGGAGGTCCTGGG GGAGGAGGCGCGGGGGGAGGCCTGGCTGGACCACCAGTGGGGGGAACAGCTCTCCGGGCTTGCCGCCACCTGGGACTGGT TCGGCCTCCACCTCTCCGACGGCTCCGAGCTCATGGCCTACCGGGTCAAGGCGCCCTCGGGACGGGTGGTCCAGGTCCTG GCGAGCCGGGTGGACCCCCTGGGCAACAGGGAGGACCTCGCCCTGGACTTCCTTCCCTTGGAGACCTGGACGAGCCCCTC GGGCCGCGCCTACACCCTGGTCTGGCGCCTGGAAGGGCCGGAACTCACCTTGGTCCTGAGGCCCCTCTTCCGCGAGGGGG AGATCCTCTCCCGCACCACCCGGGTGGCCTACTGGGAAGGGCCCGTGGCGGGGGAGGGCCGCTTCAGGGGCTACCGCGTC CGCGCCCGCGGCATGGGCGAGTTCGTGGCCGGGGCCTTCCGGCCGTAA
Upstream 100 bases:
>100_bases CGAGCCGCCTAAGGACCCGGTGAAGGTAAGGGGGCTTTCCCCCTCCAGGACCAAGTCCACCAGGCTTTCCCCCACGAGGG CGATAGCGGGCTTCTCCACC
Downstream 100 bases:
>100_bases GGTTTTTTACACGGTTTTCACATCCTCCCCCTACCTTGGAAGCAGAAAGGAGGTGGGTTGAAGTGGCCCTCTTCGGCAGT CTGGACTCCATGCCCCTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: Secreted Hydrolase; Hydroxyneurosporene Synthase; Secreted Hydrolase-Like; ABC-Type Transport System Hydrolase Component; Hydroxymethylglutaryl-Co A Reductase
Number of amino acids: Translated: 335; Mature: 335
Protein sequence:
>335_residues MRLLWREMRPFRTAWLALLLAACAPALLAVDPGRLPEPEDWDPKPAQLEWWYASGWVEPYAFHFAFFKAYAPPSYRILGL PGSLFGPFHAAHLALTDLRTGKRRFLEVADQDLFAKRGEALPGPRLALMGWRFYREGEGFRLEAPGVDLRFRPLKPPVVH PPSGTAETGRMHYQSYTRVAAWGEVLGEEARGEAWLDHQWGEQLSGLAATWDWFGLHLSDGSELMAYRVKAPSGRVVQVL ASRVDPLGNREDLALDFLPLETWTSPSGRAYTLVWRLEGPELTLVLRPLFREGEILSRTTRVAYWEGPVAGEGRFRGYRV RARGMGEFVAGAFRP
Sequences:
>Translated_335_residues MRLLWREMRPFRTAWLALLLAACAPALLAVDPGRLPEPEDWDPKPAQLEWWYASGWVEPYAFHFAFFKAYAPPSYRILGL PGSLFGPFHAAHLALTDLRTGKRRFLEVADQDLFAKRGEALPGPRLALMGWRFYREGEGFRLEAPGVDLRFRPLKPPVVH PPSGTAETGRMHYQSYTRVAAWGEVLGEEARGEAWLDHQWGEQLSGLAATWDWFGLHLSDGSELMAYRVKAPSGRVVQVL ASRVDPLGNREDLALDFLPLETWTSPSGRAYTLVWRLEGPELTLVLRPLFREGEILSRTTRVAYWEGPVAGEGRFRGYRV RARGMGEFVAGAFRP >Mature_335_residues MRLLWREMRPFRTAWLALLLAACAPALLAVDPGRLPEPEDWDPKPAQLEWWYASGWVEPYAFHFAFFKAYAPPSYRILGL PGSLFGPFHAAHLALTDLRTGKRRFLEVADQDLFAKRGEALPGPRLALMGWRFYREGEGFRLEAPGVDLRFRPLKPPVVH PPSGTAETGRMHYQSYTRVAAWGEVLGEEARGEAWLDHQWGEQLSGLAATWDWFGLHLSDGSELMAYRVKAPSGRVVQVL ASRVDPLGNREDLALDFLPLETWTSPSGRAYTLVWRLEGPELTLVLRPLFREGEILSRTTRVAYWEGPVAGEGRFRGYRV RARGMGEFVAGAFRP
Specific function: Unknown
COG id: COG5621
COG function: function code R; Predicted secreted hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37916; Mature: 37916
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLWREMRPFRTAWLALLLAACAPALLAVDPGRLPEPEDWDPKPAQLEWWYASGWVEPY CCCHHHHCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCHH AFHFAFFKAYAPPSYRILGLPGSLFGPFHAAHLALTDLRTGKRRFLEVADQDLFAKRGEA HHHHHHHHHCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC LPGPRLALMGWRFYREGEGFRLEAPGVDLRFRPLKPPVVHPPSGTAETGRMHYQSYTRVA CCCCCEEEEEEEEEECCCCEEEECCCCCEEEECCCCCEECCCCCCCCCCHHHHHHHHHHH AWGEVLGEEARGEAWLDHQWGEQLSGLAATWDWFGLHLSDGSELMAYRVKAPSGRVVQVL HHHHHHHHHHCCCEECCHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEEECCCCHHHHHH ASRVDPLGNREDLALDFLPLETWTSPSGRAYTLVWRLEGPELTLVLRPLFREGEILSRTT HHHCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEECHHCCCCHHHHEE RVAYWEGPVAGEGRFRGYRVRARGMGEFVAGAFRP EEEEECCCCCCCCCCCEEEEEECCCCHHHHCCCCC >Mature Secondary Structure MRLLWREMRPFRTAWLALLLAACAPALLAVDPGRLPEPEDWDPKPAQLEWWYASGWVEPY CCCHHHHCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCHH AFHFAFFKAYAPPSYRILGLPGSLFGPFHAAHLALTDLRTGKRRFLEVADQDLFAKRGEA HHHHHHHHHCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC LPGPRLALMGWRFYREGEGFRLEAPGVDLRFRPLKPPVVHPPSGTAETGRMHYQSYTRVA CCCCCEEEEEEEEEECCCCEEEECCCCCEEEECCCCCEECCCCCCCCCCHHHHHHHHHHH AWGEVLGEEARGEAWLDHQWGEQLSGLAATWDWFGLHLSDGSELMAYRVKAPSGRVVQVL HHHHHHHHHHCCCEECCHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEEECCCCHHHHHH ASRVDPLGNREDLALDFLPLETWTSPSGRAYTLVWRLEGPELTLVLRPLFREGEILSRTT HHHCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEECHHCCCCHHHHEE RVAYWEGPVAGEGRFRGYRVRARGMGEFVAGAFRP EEEEECCCCCCCCCCCEEEEEECCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA