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The map label for this gene is cph2 [H]

Identifier: 55980958

GI number: 55980958

Start: 934173

End: 936425

Strand: Direct

Name: cph2 [H]

Synonym: TTHA0989

Alternate gene names: 55980958

Gene position: 934173-936425 (Clockwise)

Preceding gene: 55980956

Following gene: 55980959

Centisome position: 50.5

GC content: 71.37

Gene sequence:

>2253_bases
GTGGTAGCATGGGGCGCAACAATGCACTGGCCCCTCTACGTCGCCCTGGCCGCCCTCGCCCTGGGAGCGGCGCTTGCGGG
GCTTCGGGAGAGCGCCGCCGTCCCCTGGTTCATGGTGGCCGTGGGCCTCGTGGCGAGCGTCTTCGGGCTCGGGGCGGGGC
TTGCCGCCCTGGGCCTCGCAAGCCTCCTCCTCTTCTTCCAAGGGGCCATGAACCCCTCCTCCCTCGCCGCCCTCCTCCTC
GCCGCCCTTCTTGCGCACCAGGTGGGGGAAAGCCTCCGCCGGGCCCACCGCCGGGCCAAGTACCTGGCCCAGACCCACAG
GCTCCTCGCCGAGGCCCTGGAGGCCCTCCCCAAGGCCCAGAACCGGGAAGAACTCCTGAAAAGCCTCCCCGAGCGCCTCG
CCCGCCTCGGGGAGCGGGGGCACGTGGGGGTGTGGGTGCCCGAGGGGCAGGGCCTCCGCCTCCTCGCCGCCCGCCCCCCC
CTCTCCGTGGAGACCATCCCCTACGGGGGCGTGGTGGGCCGGGCCTACCGGGAGGGGAGGCCCGTGTACGTGCCGGACGT
GCGCCGGGACCCGGACTACATCGCCCCCCCGGACCACAAGGCCCTCGCCGAGCTCGCCCTTCCCCTCCGGGAGCGGGGGG
AGGTGGTGGCCGTCCTCAACCTGGAGCGGGACCGGCCCTTCCCCGAGGAGCTCCAGGAGGGCCTTAAGCGCTTCGCCCAG
GCGGTGAGCCTCCAGCTTTCCCGCCTGGCGGACGAGGAGGAAAGGCGGCTCGTGGCGGAGCTCTCCCTCGCCCTGCAAAG
CGCCTCCCGCCTCGAGGAGGCGGCGGCCAAGGCCCTGGCCCTCCTGGTGCGGGCCTTGGGCCTCGAGGCCGGCGCCTTCT
GGGAGGTCCGGGGCGCCCGCATGGTGAACCTCGCCGCCCACGGCGTGGAGGAGCCCGCCCTCCGCAAGGTCCTGGAGGAG
GGCCTCCCTTACGGCGTAGGCCTCGCCTGGCGGGTCTACGAAACGAGAAGCCCCCTCTTCACCGCCCGCTACGCCGAGGA
GGACCGGACCGTCCCCGCGCTAAAAGCCCTGGACTGGCGCACCTTCGCCGCCCTCCCCGTCCCCACCCCGGGGGCGCCCC
GGGCGAGGCGGATTTTTGTGGTGGGCCAGAGGGCGGAAAGGCTTTGGCGGAGAAGCGAGGTGGACCTCCTCCTCCTCGCT
TGCCGTACCCTGGGCCTCGGTCTGGAACGCCTCACGGAAAAGGCCCGGCACGAGGCGGTCAACCGGATCTTCCTGGAGCT
TTTGGAAAAACCCCCGGAGGAGCTCTACCAGGCGGTCCTGGAAGAGGCCATCCGCCAGGTCCCGGGAGCGGAGGCGGGAA
GCCTCTTGGTCTGGGAAGACGGGGCCTACCGCTACAAGGCGGCCTTTGGCTACGACCTGGAGGGCCTAAAGGCCCTGGCC
TTCACCCGGGAGGCCCAGCTCAAATGGTACGGCCTGGGGGAGGAAAAGGCCCGCCAAGGGGAGCCCCGCCTCCTCAGCGT
GGAGGAAAGGCCCATCGCCGAGATCAGCCACGAGACCGCCCCGCCCGAGGTCATAGACGCCGCCGGGAAGGCCGAGGAGA
TCCAGGCCAACCTCTGCCTCCCCATCCCCTACAAGGGGGAGGTCCTGGCCTACCTCAACCTGGAGAACCTCCACGACCCC
AAAGCCTTCGGCGAGGACTCCCTGGAGGCCGCCCGCTTCTTCGCCACGCCCCTCGCCACCCTCCTCCACGAAATCCGCAC
CCGGAAGCTCCTGGAAGAGGCCGCCCTCACCGACCCCCTCACGGGCCTGCCCAACCGCCGGGCCTTTGACCGCTTTCTGG
AAGAGGAGCTCAAGCGGGCGGAGCGCTACGGCTACCCTCTCGCCCTCGCGGTCATGGACCTGAGGGGCTTCAAGCAGGTG
AACGACCGCCTGGGCCACGCCGTGGGGGACCTCGCCCTCATGAAGGTGGCCGAGGCCCTGCAAAGGGAGAAGCGGAACGG
GGACCGGATCTTCCGCTGGGGCGGGGACGAGTTCGCCGCCCTCTTCCCCCACACCGGGAAGGAAGGCGCCCTCAAGGCCG
CCTTCCGCTACGCCCGGGCCATAGAGGCCCTCTGCTTCGGGGGGCTCTGCCTGGGGGTGAACATCGGCCTCGCCGCCTTC
CCCGAGGACGGCAAGACCCCCGACGAGCTCCTCTCCGCCGCCGACAGCCGCATGTACCAGGCCAAGGCGCAAGGGCTCGC
CGTCTTGGCTTGA

Upstream 100 bases:

>100_bases
TCCCGGTCGGGAAGGAGGAGGACGAAGACCAAGGCCCCAAGAATGACGAGGGCTACACTTTTTGAACCACCGCACCCCCC
CTGCTCTCCAAGCCTAGGCC

Downstream 100 bases:

>100_bases
GTCCGGGGAAGACCAGGCCCATTTCGCCTCAAGGAGGAGGCGGACGACGGGTACGCCACCCAGCTCGCCGGGTGGGCGGC
GGAGGGCGTGGCGCCCCAGA

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 750; Mature: 750

Protein sequence:

>750_residues
MVAWGATMHWPLYVALAALALGAALAGLRESAAVPWFMVAVGLVASVFGLGAGLAALGLASLLLFFQGAMNPSSLAALLL
AALLAHQVGESLRRAHRRAKYLAQTHRLLAEALEALPKAQNREELLKSLPERLARLGERGHVGVWVPEGQGLRLLAARPP
LSVETIPYGGVVGRAYREGRPVYVPDVRRDPDYIAPPDHKALAELALPLRERGEVVAVLNLERDRPFPEELQEGLKRFAQ
AVSLQLSRLADEEERRLVAELSLALQSASRLEEAAAKALALLVRALGLEAGAFWEVRGARMVNLAAHGVEEPALRKVLEE
GLPYGVGLAWRVYETRSPLFTARYAEEDRTVPALKALDWRTFAALPVPTPGAPRARRIFVVGQRAERLWRRSEVDLLLLA
CRTLGLGLERLTEKARHEAVNRIFLELLEKPPEELYQAVLEEAIRQVPGAEAGSLLVWEDGAYRYKAAFGYDLEGLKALA
FTREAQLKWYGLGEEKARQGEPRLLSVEERPIAEISHETAPPEVIDAAGKAEEIQANLCLPIPYKGEVLAYLNLENLHDP
KAFGEDSLEAARFFATPLATLLHEIRTRKLLEEAALTDPLTGLPNRRAFDRFLEEELKRAERYGYPLALAVMDLRGFKQV
NDRLGHAVGDLALMKVAEALQREKRNGDRIFRWGGDEFAALFPHTGKEGALKAAFRYARAIEALCFGGLCLGVNIGLAAF
PEDGKTPDELLSAADSRMYQAKAQGLAVLA

Sequences:

>Translated_750_residues
MVAWGATMHWPLYVALAALALGAALAGLRESAAVPWFMVAVGLVASVFGLGAGLAALGLASLLLFFQGAMNPSSLAALLL
AALLAHQVGESLRRAHRRAKYLAQTHRLLAEALEALPKAQNREELLKSLPERLARLGERGHVGVWVPEGQGLRLLAARPP
LSVETIPYGGVVGRAYREGRPVYVPDVRRDPDYIAPPDHKALAELALPLRERGEVVAVLNLERDRPFPEELQEGLKRFAQ
AVSLQLSRLADEEERRLVAELSLALQSASRLEEAAAKALALLVRALGLEAGAFWEVRGARMVNLAAHGVEEPALRKVLEE
GLPYGVGLAWRVYETRSPLFTARYAEEDRTVPALKALDWRTFAALPVPTPGAPRARRIFVVGQRAERLWRRSEVDLLLLA
CRTLGLGLERLTEKARHEAVNRIFLELLEKPPEELYQAVLEEAIRQVPGAEAGSLLVWEDGAYRYKAAFGYDLEGLKALA
FTREAQLKWYGLGEEKARQGEPRLLSVEERPIAEISHETAPPEVIDAAGKAEEIQANLCLPIPYKGEVLAYLNLENLHDP
KAFGEDSLEAARFFATPLATLLHEIRTRKLLEEAALTDPLTGLPNRRAFDRFLEEELKRAERYGYPLALAVMDLRGFKQV
NDRLGHAVGDLALMKVAEALQREKRNGDRIFRWGGDEFAALFPHTGKEGALKAAFRYARAIEALCFGGLCLGVNIGLAAF
PEDGKTPDELLSAADSRMYQAKAQGLAVLA
>Mature_750_residues
MVAWGATMHWPLYVALAALALGAALAGLRESAAVPWFMVAVGLVASVFGLGAGLAALGLASLLLFFQGAMNPSSLAALLL
AALLAHQVGESLRRAHRRAKYLAQTHRLLAEALEALPKAQNREELLKSLPERLARLGERGHVGVWVPEGQGLRLLAARPP
LSVETIPYGGVVGRAYREGRPVYVPDVRRDPDYIAPPDHKALAELALPLRERGEVVAVLNLERDRPFPEELQEGLKRFAQ
AVSLQLSRLADEEERRLVAELSLALQSASRLEEAAAKALALLVRALGLEAGAFWEVRGARMVNLAAHGVEEPALRKVLEE
GLPYGVGLAWRVYETRSPLFTARYAEEDRTVPALKALDWRTFAALPVPTPGAPRARRIFVVGQRAERLWRRSEVDLLLLA
CRTLGLGLERLTEKARHEAVNRIFLELLEKPPEELYQAVLEEAIRQVPGAEAGSLLVWEDGAYRYKAAFGYDLEGLKALA
FTREAQLKWYGLGEEKARQGEPRLLSVEERPIAEISHETAPPEVIDAAGKAEEIQANLCLPIPYKGEVLAYLNLENLHDP
KAFGEDSLEAARFFATPLATLLHEIRTRKLLEEAALTDPLTGLPNRRAFDRFLEEELKRAERYGYPLALAVMDLRGFKQV
NDRLGHAVGDLALMKVAEALQREKRNGDRIFRWGGDEFAALFPHTGKEGALKAAFRYARAIEALCFGGLCLGVNIGLAAF
PEDGKTPDELLSAADSRMYQAKAQGLAVLA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=177, Percent_Identity=36.1581920903955, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI145693134, Length=185, Percent_Identity=32.972972972973, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=32.9411764705882, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=36.5384615384615, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1787816, Length=155, Percent_Identity=34.1935483870968, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI1787262, Length=185, Percent_Identity=28.1081081081081, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787056, Length=162, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1788381, Length=193, Percent_Identity=31.0880829015544, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=188, Percent_Identity=27.6595744680851, Blast_Score=74, Evalue=5e-14,
Organism=Escherichia coli, GI1787541, Length=176, Percent_Identity=30.1136363636364, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1788956, Length=184, Percent_Identity=31.5217391304348, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 82445; Mature: 82445

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAWGATMHWPLYVALAALALGAALAGLRESAAVPWFMVAVGLVASVFGLGAGLAALGLA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SLLLFFQGAMNPSSLAALLLAALLAHQVGESLRRAHRRAKYLAQTHRLLAEALEALPKAQ
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NREELLKSLPERLARLGERGHVGVWVPEGQGLRLLAARPPLSVETIPYGGVVGRAYREGR
CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCC
PVYVPDVRRDPDYIAPPDHKALAELALPLRERGEVVAVLNLERDRPFPEELQEGLKRFAQ
CEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHH
AVSLQLSRLADEEERRLVAELSLALQSASRLEEAAAKALALLVRALGLEAGAFWEVRGAR
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCE
MVNLAAHGVEEPALRKVLEEGLPYGVGLAWRVYETRSPLFTARYAEEDRTVPALKALDWR
EEHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEHHCCCCCCCHHHHHCCCH
TFAALPVPTPGAPRARRIFVVGQRAERLWRRSEVDLLLLACRTLGLGLERLTEKARHEAV
HEEECCCCCCCCCCCEEEEEECHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
NRIFLELLEKPPEELYQAVLEEAIRQVPGAEAGSLLVWEDGAYRYKAAFGYDLEGLKALA
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHH
FTREAQLKWYGLGEEKARQGEPRLLSVEERPIAEISHETAPPEVIDAAGKAEEIQANLCL
HHHHCCEEEEECCHHHHHCCCCCEEECCCCCHHHHHCCCCCHHHHHCCCCHHHHCCCEEE
PIPYKGEVLAYLNLENLHDPKAFGEDSLEAARFFATPLATLLHEIRTRKLLEEAALTDPL
CCCCCCCEEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TGLPNRRAFDRFLEEELKRAERYGYPLALAVMDLRGFKQVNDRLGHAVGDLALMKVAEAL
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QREKRNGDRIFRWGGDEFAALFPHTGKEGALKAAFRYARAIEALCFGGLCLGVNIGLAAF
HHHHCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEC
PEDGKTPDELLSAADSRMYQAKAQGLAVLA
CCCCCCHHHHHHHHHHHHHHHHHCCCEECC
>Mature Secondary Structure
MVAWGATMHWPLYVALAALALGAALAGLRESAAVPWFMVAVGLVASVFGLGAGLAALGLA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SLLLFFQGAMNPSSLAALLLAALLAHQVGESLRRAHRRAKYLAQTHRLLAEALEALPKAQ
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NREELLKSLPERLARLGERGHVGVWVPEGQGLRLLAARPPLSVETIPYGGVVGRAYREGR
CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCC
PVYVPDVRRDPDYIAPPDHKALAELALPLRERGEVVAVLNLERDRPFPEELQEGLKRFAQ
CEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHH
AVSLQLSRLADEEERRLVAELSLALQSASRLEEAAAKALALLVRALGLEAGAFWEVRGAR
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCE
MVNLAAHGVEEPALRKVLEEGLPYGVGLAWRVYETRSPLFTARYAEEDRTVPALKALDWR
EEHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEHHCCCCCCCHHHHHCCCH
TFAALPVPTPGAPRARRIFVVGQRAERLWRRSEVDLLLLACRTLGLGLERLTEKARHEAV
HEEECCCCCCCCCCCEEEEEECHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
NRIFLELLEKPPEELYQAVLEEAIRQVPGAEAGSLLVWEDGAYRYKAAFGYDLEGLKALA
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHH
FTREAQLKWYGLGEEKARQGEPRLLSVEERPIAEISHETAPPEVIDAAGKAEEIQANLCL
HHHHCCEEEEECCHHHHHCCCCCEEECCCCCHHHHHCCCCCHHHHHCCCCHHHHCCCEEE
PIPYKGEVLAYLNLENLHDPKAFGEDSLEAARFFATPLATLLHEIRTRKLLEEAALTDPL
CCCCCCCEEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TGLPNRRAFDRFLEEELKRAERYGYPLALAVMDLRGFKQVNDRLGHAVGDLALMKVAEAL
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QREKRNGDRIFRWGGDEFAALFPHTGKEGALKAAFRYARAIEALCFGGLCLGVNIGLAAF
HHHHCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEC
PEDGKTPDELLSAADSRMYQAKAQGLAVLA
CCCCCCHHHHHHHHHHHHHHHHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]