Click here to switch to the map view.

The map label for this gene is ycgM [C]

Identifier: 55980778

GI number: 55980778

Start: 772259

End: 773053

Strand: Direct

Name: ycgM [C]

Synonym: TTHA0809

Alternate gene names: 55980778

Gene position: 772259-773053 (Clockwise)

Preceding gene: 55980777

Following gene: 55980779

Centisome position: 41.75

GC content: 69.18

Gene sequence:

>795_bases
ATGAAGATCCTGCGCTTCAACGAGGGGAGGTGGGGGGTCCTCGAGGGCGAGCTCGTCCTGGAGACGGACGGCCCCGGGGG
GAACCCCACGGGAAGGCGGTACGACCTGGCCTCCGTCACCCTGCTGCCCCCGGCCACGCCCACCAAGATCGTCTGCGTGG
GGCGGAACTACCGGGAGCACATCCGGGAGATGGGGCACGACTTCGGGGAGGACCTGCCCAAGGAGCCCGGCCTCTTCCTC
AAGGGGCCCAACGCCCTGGCCCGGCCCGGGAACCCCAGGGACCCTTGGGGCACCGCCGAGCCCGTCCCCTACCCCTTTTT
CACCGAGGAGCTCCACTACGAGGGGGAGCTTGCCGTGGTCGTCGGGGACAGGATGCGCCATGTCCCCCCGGAGAAGGCCC
TGGACCACGTCCTGGGCTACACCGTGGCCGTGGACATCACCGCCCGGGACGTGCAGAAGAAGGACCTGCAGTGGGTCCGG
GCCAAGAGCGCCGACAAGTTCCTGCCCTTGGGCCCCTGGCTGGAGACGGACCTCAACCCCCAGGACACCTGGGTGCGCAC
CTACGTGAACGGGACGCTGCGGCAGGAAGGCCACACCTCCCAGATGATCTTCAGCGTGGCCGAGATCCTCTCCTACATCT
CCACCTTCATGACCCTGGAGCCTTTGGACGTGGTCCTCACCGGGACCCCCGAGGGCGTGGGGGCCCTGAGGCCCGGGGAC
CGGCTGGAGGTGGCCGTGGAGGGCGTGGGAACCCTCTTCACCCTCATCGGGCCCAAGGAGGAGAGGCCGTGGTGA

Upstream 100 bases:

>100_bases
CACCCTTTCCGGGGAGGCGAGGCTCGGGGCGCTTCTCGTGGCGGGGGTCGTCCTCCTCCGGGGCCTGCAAATCCTGGCGG
GCAGGTGGTAGCTTAGGGGC

Downstream 100 bases:

>100_bases
AGGTCTTGGACCTCCGCTTCCAGGGGGCGGAGCGGGTCATCGCGAGCTTTCTCCTGGACTCCGGGGAGGGGCCCGTCCTC
GTGGAGACGGGGCCGGAAAG

Product: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MKILRFNEGRWGVLEGELVLETDGPGGNPTGRRYDLASVTLLPPATPTKIVCVGRNYREHIREMGHDFGEDLPKEPGLFL
KGPNALARPGNPRDPWGTAEPVPYPFFTEELHYEGELAVVVGDRMRHVPPEKALDHVLGYTVAVDITARDVQKKDLQWVR
AKSADKFLPLGPWLETDLNPQDTWVRTYVNGTLRQEGHTSQMIFSVAEILSYISTFMTLEPLDVVLTGTPEGVGALRPGD
RLEVAVEGVGTLFTLIGPKEERPW

Sequences:

>Translated_264_residues
MKILRFNEGRWGVLEGELVLETDGPGGNPTGRRYDLASVTLLPPATPTKIVCVGRNYREHIREMGHDFGEDLPKEPGLFL
KGPNALARPGNPRDPWGTAEPVPYPFFTEELHYEGELAVVVGDRMRHVPPEKALDHVLGYTVAVDITARDVQKKDLQWVR
AKSADKFLPLGPWLETDLNPQDTWVRTYVNGTLRQEGHTSQMIFSVAEILSYISTFMTLEPLDVVLTGTPEGVGALRPGD
RLEVAVEGVGTLFTLIGPKEERPW
>Mature_264_residues
MKILRFNEGRWGVLEGELVLETDGPGGNPTGRRYDLASVTLLPPATPTKIVCVGRNYREHIREMGHDFGEDLPKEPGLFL
KGPNALARPGNPRDPWGTAEPVPYPFFTEELHYEGELAVVVGDRMRHVPPEKALDHVLGYTVAVDITARDVQKKDLQWVR
AKSADKFLPLGPWLETDLNPQDTWVRTYVNGTLRQEGHTSQMIFSVAEILSYISTFMTLEPLDVVLTGTPEGVGALRPGD
RLEVAVEGVGTLFTLIGPKEERPW

Specific function: Unknown

COG id: COG0179

COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAH family [H]

Homologues:

Organism=Homo sapiens, GI66348062, Length=219, Percent_Identity=43.37899543379, Blast_Score=157, Evalue=9e-39,
Organism=Homo sapiens, GI13654274, Length=211, Percent_Identity=43.1279620853081, Blast_Score=155, Evalue=3e-38,
Organism=Homo sapiens, GI215422413, Length=206, Percent_Identity=43.6893203883495, Blast_Score=155, Evalue=4e-38,
Organism=Homo sapiens, GI156231349, Length=233, Percent_Identity=36.480686695279, Blast_Score=143, Evalue=2e-34,
Organism=Homo sapiens, GI40786394, Length=233, Percent_Identity=35.6223175965665, Blast_Score=140, Evalue=9e-34,
Organism=Escherichia coli, GI1787428, Length=208, Percent_Identity=41.3461538461538, Blast_Score=141, Evalue=4e-35,
Organism=Caenorhabditis elegans, GI17557057, Length=202, Percent_Identity=41.0891089108911, Blast_Score=139, Evalue=1e-33,
Organism=Saccharomyces cerevisiae, GI6324161, Length=228, Percent_Identity=37.280701754386, Blast_Score=133, Evalue=2e-32,
Organism=Drosophila melanogaster, GI28572127, Length=231, Percent_Identity=38.5281385281385, Blast_Score=142, Evalue=3e-34,
Organism=Drosophila melanogaster, GI24663695, Length=228, Percent_Identity=34.6491228070175, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI28571789, Length=210, Percent_Identity=31.9047619047619, Blast_Score=104, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002529
- InterPro:   IPR011234 [H]

Pfam domain/function: PF01557 FAA_hydrolase [H]

EC number: NA

Molecular weight: Translated: 29390; Mature: 29390

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILRFNEGRWGVLEGELVLETDGPGGNPTGRRYDLASVTLLPPATPTKIVCVGRNYREH
CEEEEECCCCEEEEECEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCEEEEECCCHHHH
IREMGHDFGEDLPKEPGLFLKGPNALARPGNPRDPWGTAEPVPYPFFTEELHYEGELAVV
HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEE
VGDRMRHVPPEKALDHVLGYTVAVDITARDVQKKDLQWVRAKSADKFLPLGPWLETDLNP
ECCCHHCCCHHHHHHHHHCEEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
QDTWVRTYVNGTLRQEGHTSQMIFSVAEILSYISTFMTLEPLDVVLTGTPEGVGALRPGD
CHHEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
RLEVAVEGVGTLFTLIGPKEERPW
CEEEEEECCCEEEEEECCCCCCCC
>Mature Secondary Structure
MKILRFNEGRWGVLEGELVLETDGPGGNPTGRRYDLASVTLLPPATPTKIVCVGRNYREH
CEEEEECCCCEEEEECEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCEEEEECCCHHHH
IREMGHDFGEDLPKEPGLFLKGPNALARPGNPRDPWGTAEPVPYPFFTEELHYEGELAVV
HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEE
VGDRMRHVPPEKALDHVLGYTVAVDITARDVQKKDLQWVRAKSADKFLPLGPWLETDLNP
ECCCHHCCCHHHHHHHHHCEEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
QDTWVRTYVNGTLRQEGHTSQMIFSVAEILSYISTFMTLEPLDVVLTGTPEGVGALRPGD
CHHEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
RLEVAVEGVGTLFTLIGPKEERPW
CEEEEEECCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]