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The map label for this gene is yfdE [H]

Identifier: 55980661

GI number: 55980661

Start: 655126

End: 655956

Strand: Direct

Name: yfdE [H]

Synonym: TTHA0692

Alternate gene names: 55980661

Gene position: 655126-655956 (Clockwise)

Preceding gene: 55980660

Following gene: 55980665

Centisome position: 35.42

GC content: 71.24

Gene sequence:

>831_bases
ATGGCGCCCTCCGCATGGCCCCCCGGTAAGGTCTTGGACCTCACCCGGCTTTTGCCCGGGCCCTTGGCGGGAAAGCTCCT
CTTGGAGATGGGCTTTCCCGTCCTCAAGGTGGAGCCCCCAGGGGGGGACCCCCTGAAGGCCCTCGCCCCCGAGGCCTACC
GCTTTTTGAACGAGGGGAAGGAGGTCCTCGTCCTGGACCTGAAGGCGGAGGAGGGAAGGGCGCGGCTTCTGGGCCTGGTG
GCGGAGGCGGCCGTCTTCCTGGAGTCCAACCGCCCGGGGGCGATGGAGAGGCTCGGCCTGGGGCCCGAAACGCTTCTGGC
CGAGAACCCCCGCCTGGTCTACGTCCGCCTCCGGGGCTACCGGGACGCTCCCGACCCCGGCCACGACCTCACCTACCTGG
CGGAGGCGGGGCTTCTTGGGCGGTTTCCCTGGCGGGCCTTCCAGTTCGCCGACCTGGCGGGGGCCTACGCCCTGGCCCTC
GCCGCCCTCAAGGGCCTCCTCCTGGGGGGCGGGTTTTACGAGGTGGCCCTCGCCGAGGCGGTGAAGTCCATCGCCTATCC
GCCGATTCCCTTCCTGGACGGCTCGGTCCTCTGCTACGGGGTCTACCGGGCGAGGGAGGGGGAGGTGGCCCTCGCCGCCC
TCGAGCCCCACCTCTGGGCCCGCTTCTGCCAAAAGGCGGGGCTTCCCGAGCTTGTGGAGGCCGCCTTCAGCCCTGCTTCC
CCGGAAAACCCCCTCTACAGGACCCTTTGCGCCTTCTTCGCCCAAAGGCCCGCCCGGGCCTGGGAGGCCTGGGCCAGGGA
GGAGGGCCTCCCCCTCAGGGCCGTCCGCTAG

Upstream 100 bases:

>100_bases
GTCCCCTTTCCCCCGAGGCTTGGCCGCCCCGAGGAGTACGCCGCCTTGGTCCTCCACATCCTGGAAAACCCCATGCTGAA
CGGGGAGGTGGTCCGGCTGG

Downstream 100 bases:

>100_bases
CGGGCCGTCCAGCCCAGGTCTATGGGGAAGACGGCCCCGGTGATGGCGCTGGCCTTCTCCGAGGCCAGGAAGAGGGCGAG
CTCGGCCACCTCCTCGGGCG

Product: fatty acid Co-A racemase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MAPSAWPPGKVLDLTRLLPGPLAGKLLLEMGFPVLKVEPPGGDPLKALAPEAYRFLNEGKEVLVLDLKAEEGRARLLGLV
AEAAVFLESNRPGAMERLGLGPETLLAENPRLVYVRLRGYRDAPDPGHDLTYLAEAGLLGRFPWRAFQFADLAGAYALAL
AALKGLLLGGGFYEVALAEAVKSIAYPPIPFLDGSVLCYGVYRAREGEVALAALEPHLWARFCQKAGLPELVEAAFSPAS
PENPLYRTLCAFFAQRPARAWEAWAREEGLPLRAVR

Sequences:

>Translated_276_residues
MAPSAWPPGKVLDLTRLLPGPLAGKLLLEMGFPVLKVEPPGGDPLKALAPEAYRFLNEGKEVLVLDLKAEEGRARLLGLV
AEAAVFLESNRPGAMERLGLGPETLLAENPRLVYVRLRGYRDAPDPGHDLTYLAEAGLLGRFPWRAFQFADLAGAYALAL
AALKGLLLGGGFYEVALAEAVKSIAYPPIPFLDGSVLCYGVYRAREGEVALAALEPHLWARFCQKAGLPELVEAAFSPAS
PENPLYRTLCAFFAQRPARAWEAWAREEGLPLRAVR
>Mature_275_residues
APSAWPPGKVLDLTRLLPGPLAGKLLLEMGFPVLKVEPPGGDPLKALAPEAYRFLNEGKEVLVLDLKAEEGRARLLGLVA
EAAVFLESNRPGAMERLGLGPETLLAENPRLVYVRLRGYRDAPDPGHDLTYLAEAGLLGRFPWRAFQFADLAGAYALALA
ALKGLLLGGGFYEVALAEAVKSIAYPPIPFLDGSVLCYGVYRAREGEVALAALEPHLWARFCQKAGLPELVEAAFSPASP
ENPLYRTLCAFFAQRPARAWEAWAREEGLPLRAVR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=287, Percent_Identity=31.7073170731707, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI266456254, Length=287, Percent_Identity=31.7073170731707, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI266458393, Length=290, Percent_Identity=31.3793103448276, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI266458397, Length=244, Percent_Identity=33.6065573770492, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI266458395, Length=132, Percent_Identity=40.9090909090909, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI42822893, Length=132, Percent_Identity=40.9090909090909, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI300863124, Length=267, Percent_Identity=26.9662921348315, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI300863128, Length=267, Percent_Identity=26.9662921348315, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI300863126, Length=239, Percent_Identity=26.3598326359833, Blast_Score=76, Evalue=4e-14,
Organism=Escherichia coli, GI87082093, Length=316, Percent_Identity=28.7974683544304, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1788717, Length=122, Percent_Identity=30.327868852459, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI32564160, Length=246, Percent_Identity=28.8617886178862, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=287, Percent_Identity=26.1324041811847, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24585488, Length=257, Percent_Identity=32.295719844358, Blast_Score=104, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24648431, Length=144, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 29925; Mature: 29794

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPSAWPPGKVLDLTRLLPGPLAGKLLLEMGFPVLKVEPPGGDPLKALAPEAYRFLNEGK
CCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
EVLVLDLKAEEGRARLLGLVAEAAVFLESNRPGAMERLGLGPETLLAENPRLVYVRLRGY
EEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHCCCCCEEEEEEECC
RDAPDPGHDLTYLAEAGLLGRFPWRAFQFADLAGAYALALAALKGLLLGGGFYEVALAEA
CCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VKSIAYPPIPFLDGSVLCYGVYRAREGEVALAALEPHLWARFCQKAGLPELVEAAFSPAS
HHHHCCCCCCCCCCCEEEEEEEECCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHCCCCC
PENPLYRTLCAFFAQRPARAWEAWAREEGLPLRAVR
CCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
APSAWPPGKVLDLTRLLPGPLAGKLLLEMGFPVLKVEPPGGDPLKALAPEAYRFLNEGK
CCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
EVLVLDLKAEEGRARLLGLVAEAAVFLESNRPGAMERLGLGPETLLAENPRLVYVRLRGY
EEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHCCCCCEEEEEEECC
RDAPDPGHDLTYLAEAGLLGRFPWRAFQFADLAGAYALALAALKGLLLGGGFYEVALAEA
CCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VKSIAYPPIPFLDGSVLCYGVYRAREGEVALAALEPHLWARFCQKAGLPELVEAAFSPAS
HHHHCCCCCCCCCCCEEEEEEEECCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHCCCCC
PENPLYRTLCAFFAQRPARAWEAWAREEGLPLRAVR
CCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]