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The map label for this gene is xylR [H]

Identifier: 55980658

GI number: 55980658

Start: 651965

End: 653038

Strand: Reverse

Name: xylR [H]

Synonym: TTHA0689

Alternate gene names: 55980658

Gene position: 653038-651965 (Counterclockwise)

Preceding gene: 55980662

Following gene: 55980657

Centisome position: 35.3

GC content: 74.12

Gene sequence:

>1074_bases
GTGAGCCGCCTCGTGGAGGAGCTGCTCCAGGAGGGGCTTTTGGAGGAGGGGCCCGCCGCGCCCTCCCCATTGGGCCGGCC
GCCCACCCTCCTCCGGCTCAGGCCCCGGGCCCGGATGGCCCTGGGCGCGGAGGTGGGCGTGGAGGGCACGGTCCTCGTGG
CCTTGGACTGGCAGGGGCAGGTGGCCTGGAGCAAGGAGTGGGCCCACGCCCCCGAGGAGGACCTCCACGCCCGCATCCAA
CGCCTCCTCCTGGAGGTCCGCCCCCACCTTCAAGACGCCCTGGGCCTCGGGATCACCCTGCCCGGGGTGGTGGCGGGGCG
CCGCCTCCTCCTCGCCCCCAACCTGGGGTGGAGGGAGGTGGACCTCAGCCCCCACCTCGCCGCCCTCCCCCTTCCCGTGG
CCCTGGAGAACGACGCCAAGGCCTCCGCCCTTTCCGAGGTCTTCCTCCACGGGGAGCAGAACCTCGCCTACGTGGTCCTG
AGCACGGGGCTCGGCGTGGGGGTGGTGGCCGAGGGCAGGCTCCTCAGGGGCGCCACCGGGGCCTTCGGGGAGGTGGGGCA
CTGGCTTGGGGAGAGGGTCTCCCCTTGCCGGTGCGGCCGCCGAGGGTGCCTGGAGGTGGCCCTGGGCCTGGAAACCCTCG
TGAAGCGCTACCGGGCCCTGGGGGGCACCGCCTCCACGCTGGAGGGCCTTCTCGCCGGGGCCCGGGCCGGGGAGGAGGCG
GCCCTCCTCGCCCTCCGCCAGCTGGGGGAGGCCCTGGGCCGGTTCCTCGCCAACCTGGCCGTGGCCTACGACCCCGCCCG
GGTGGTGGTGGGCGGGCGGGTGGCCGAGCTCTTCCCCTTCCTGGAAGCGCCCCTCCGAGCCTCCCTGGAGGCCCACGCCT
TCCTGGAGGCCCACCGGAGGCTCCCCGTGGCCCCCTCGGTCTACGGCCACCTGGCCCCGGCGGTGGGCGGGGCGAGCCTC
TTCTTGGCGCGGTTTTTTGAGCTGGGCGGCTTGTGGGCGGAAGGCCCACGTCGCAATGGAGGTGAAGGGTATGCGGAAGT
GGCTTTTGGCGATCGGTATGGTCTTGGGGCTTAG

Upstream 100 bases:

>100_bases
CCTCCGCAGGCTCAACCGCAGGGCCATCCTGAACCAGCTCAGGCGGGGCCCCCTCTCCCGCGCCGACCTGGCCCGGGCCA
CAGGCCTCGCCAAGAGCGCC

Downstream 100 bases:

>100_bases
CGCCCTGGCCCAAGGAGGCAAGCTGGAGATCTTCTCCTGGTGGGCGGGAGACGAGGGGCCGGCCCTCGAGGCCCTGATCC
GGCTCTACAAGCAGAAGTAC

Product: xylose repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MSRLVEELLQEGLLEEGPAAPSPLGRPPTLLRLRPRARMALGAEVGVEGTVLVALDWQGQVAWSKEWAHAPEEDLHARIQ
RLLLEVRPHLQDALGLGITLPGVVAGRRLLLAPNLGWREVDLSPHLAALPLPVALENDAKASALSEVFLHGEQNLAYVVL
STGLGVGVVAEGRLLRGATGAFGEVGHWLGERVSPCRCGRRGCLEVALGLETLVKRYRALGGTASTLEGLLAGARAGEEA
ALLALRQLGEALGRFLANLAVAYDPARVVVGGRVAELFPFLEAPLRASLEAHAFLEAHRRLPVAPSVYGHLAPAVGGASL
FLARFFELGGLWAEGPRRNGGEGYAEVAFGDRYGLGA

Sequences:

>Translated_357_residues
MSRLVEELLQEGLLEEGPAAPSPLGRPPTLLRLRPRARMALGAEVGVEGTVLVALDWQGQVAWSKEWAHAPEEDLHARIQ
RLLLEVRPHLQDALGLGITLPGVVAGRRLLLAPNLGWREVDLSPHLAALPLPVALENDAKASALSEVFLHGEQNLAYVVL
STGLGVGVVAEGRLLRGATGAFGEVGHWLGERVSPCRCGRRGCLEVALGLETLVKRYRALGGTASTLEGLLAGARAGEEA
ALLALRQLGEALGRFLANLAVAYDPARVVVGGRVAELFPFLEAPLRASLEAHAFLEAHRRLPVAPSVYGHLAPAVGGASL
FLARFFELGGLWAEGPRRNGGEGYAEVAFGDRYGLGA
>Mature_356_residues
SRLVEELLQEGLLEEGPAAPSPLGRPPTLLRLRPRARMALGAEVGVEGTVLVALDWQGQVAWSKEWAHAPEEDLHARIQR
LLLEVRPHLQDALGLGITLPGVVAGRRLLLAPNLGWREVDLSPHLAALPLPVALENDAKASALSEVFLHGEQNLAYVVLS
TGLGVGVVAEGRLLRGATGAFGEVGHWLGERVSPCRCGRRGCLEVALGLETLVKRYRALGGTASTLEGLLAGARAGEEAA
LLALRQLGEALGRFLANLAVAYDPARVVVGGRVAELFPFLEAPLRASLEAHAFLEAHRRLPVAPSVYGHLAPAVGGASLF
LARFFELGGLWAEGPRRNGGEGYAEVAFGDRYGLGA

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=354, Percent_Identity=22.316384180791, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787878, Length=318, Percent_Identity=22.9559748427673, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87081733, Length=261, Percent_Identity=27.9693486590038, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 37836; Mature: 37705

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS01125 ROK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLVEELLQEGLLEEGPAAPSPLGRPPTLLRLRPRARMALGAEVGVEGTVLVALDWQGQ
CHHHHHHHHHHCHHHCCCCCCCCCCCCCCEEEECCHHHHHHCCCCCCCEEEEEEEECCCC
VAWSKEWAHAPEEDLHARIQRLLLEVRPHLQDALGLGITLPGVVAGRRLLLAPNLGWREV
EEECHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCEEE
DLSPHLAALPLPVALENDAKASALSEVFLHGEQNLAYVVLSTGLGVGVVAEGRLLRGATG
CCCCCHHHCCCCEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCEEECCCC
AFGEVGHWLGERVSPCRCGRRGCLEVALGLETLVKRYRALGGTASTLEGLLAGARAGEEA
CHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHH
ALLALRQLGEALGRFLANLAVAYDPARVVVGGRVAELFPFLEAPLRASLEAHAFLEAHRR
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPVAPSVYGHLAPAVGGASLFLARFFELGGLWAEGPRRNGGEGYAEVAFGDRYGLGA
CCCCCHHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCCCCCCEEEEEECCCCCCCC
>Mature Secondary Structure 
SRLVEELLQEGLLEEGPAAPSPLGRPPTLLRLRPRARMALGAEVGVEGTVLVALDWQGQ
HHHHHHHHHHCHHHCCCCCCCCCCCCCCEEEECCHHHHHHCCCCCCCEEEEEEEECCCC
VAWSKEWAHAPEEDLHARIQRLLLEVRPHLQDALGLGITLPGVVAGRRLLLAPNLGWREV
EEECHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCEEE
DLSPHLAALPLPVALENDAKASALSEVFLHGEQNLAYVVLSTGLGVGVVAEGRLLRGATG
CCCCCHHHCCCCEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCEEECCCC
AFGEVGHWLGERVSPCRCGRRGCLEVALGLETLVKRYRALGGTASTLEGLLAGARAGEEA
CHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHH
ALLALRQLGEALGRFLANLAVAYDPARVVVGGRVAELFPFLEAPLRASLEAHAFLEAHRR
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPVAPSVYGHLAPAVGGASLFLARFFELGGLWAEGPRRNGGEGYAEVAFGDRYGLGA
CCCCCHHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCCCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]