| Definition | Thermus thermophilus HB8 chromosome, complete genome. |
|---|---|
| Accession | NC_006461 |
| Length | 1,849,742 |
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The map label for this gene is fadD [C]
Identifier: 55980555
GI number: 55980555
Start: 552511
End: 554364
Strand: Reverse
Name: fadD [C]
Synonym: TTHA0586
Alternate gene names: 55980555
Gene position: 554364-552511 (Counterclockwise)
Preceding gene: 55980556
Following gene: 55980554
Centisome position: 29.97
GC content: 69.47
Gene sequence:
>1854_bases ATGCGGGGAACCCTTTTAGAACACCTCGTGAGGCACGCCAAGGAGCGCCCCGAAGCCCCGGCCCTACGGGTGAAGCGGCT CGGCGTCTGGCAGAAGACCTCCTGGCGGGGGCTTCTGGACCGGGTCCTAAGCCTCGCCGGGGGGCTTTCCGCCCTGGGCC TTAAGGAGGGCGAGGTCCTCGCCATCCTGGGCCACAACGCCCCCGAGTGGGTGGAGGCGGAGCTCGCCGCCCAGGTCCTG GGGGCCCTCCCCATGGGCATCTACGCCGACGCCATGCCCGAGGAGGTGGGCTACTTCCTGGAGTTCACCGGGGCGAGGGG CATCGTGGTCTCCGACGAGGAGCAGCTGGACAAGGTCTACCCCCACCTCCACCTCGTGGACTTCGTCCTCGTGTGGGAGG AGGCGGGGATGAGCCGGCACTTCCGGGGGAAGGTCAGGCGCTTCAGCCAGGCCTTCGGCGACCCCAAGGTGGGGGAGGAG GCCCTAAGGAGGCGGCGCCCGGAGGAGACCGCCCTCCTCGCCCCCACTTCCGGCACCACGGGGCGGAGCAAGCTCGCCAT GCTCTCCCACCAAAACCTCCTCGCCGGGCACGAGGCGGTGGGGAAGGCCCTGGGCTTCCAGAGGGGGGCCTGGGTTTTCA GCTACCTCCCCCTTCCCTGGATCGGGGAGCAGATGCTGACCGTGGTGCAGAGCCTGGTGGAGGGCTCCACCGTCCACTTC CCCGAGGACCCCACCACGCTTAAGGAGGACCTCAAGGAGGTCCAGCCCGACTTCTTCCTGGCCCCGCCCAGGCTTTGGGA GGAGATGGCGAGCTTCATCCAAAGCCGGATGGCGGACGCCGACCCCGTCAAGGCCTTCTTCTACCGGGCCGGGATGGGGG CCCTTCTGGAGGGGGCGAACCGGGAGTTCAGGGGGGAAAGGGTGGGGCTCTGGCTCAACCTCAAGCGGGCCCTCTTCTAC CCCCTCATCGCCAGGCCCCTGAGGGCGAGGCTCGGGCTTGCCGCCTGCCGCATCGCCGTCACCGGCGGGGCGCCCCTGGG CCCGGAGGTCTTCACCTTCTTCCGCGCCCTGGGGCTGGACATCCGCCAGGTCTACGGCCAATCCGAGACCGCCGCCGCCA CCACCGCCCACGCCACCGGGGACGCCCCCCCGGAGACCGTGGGCCCCCCTCTTCCGGGCACGGAGGTGCGCATCAGCGAG GAAGGGGAGATCCAGGTGCGGGGCCCCCAGGTCTTTCAGGGCTACTTCAAGCAGGAAAAGGCCACCCGGGAGAGCTTCAC CGAGGACGGCTTCTTCCGCACGGGGGACGCGGGCTTCTTTGACGAGCGGGGGCACCTGGTGATCCTCGGGCGGGTGAAGG AGGTGGGGGCGTTGGCGGACGGCACCCGCTTCGCCCCCCAGTTCCTGGAAAACCGCCTGAAGTACTCCCCCTACATCCGG GAGGCCGTGGTACTCGGCCACGGCAGGCCCTTTGTCACCGCCCTCGTGGAGCTTGACCCGGAAAACGTCCAGAACTGGGC GAGGAGGCGGGGCCTTCCCTTCACCACCTACCAGTCCCTCACCGAGCGCCTCGAGGTCCAGGCCCTGATCGCCGAGGAGA TCCGCATGGTGAACCAGACCCTTCCCGAGAAGCTCAGGATCCGGCGCTTCGCCCTTTTGCCCAAGGAGCTCCACCCCGAC GACGAGGAGATCACCCGCACTCGGAAGGTGCGCCGCCAGATCGTGGAGGCCCGCTACGCCCCGGTGATCCAGGCCCTCTA CGGCGAGGGCGGCCGCGTGAGCCTCTCCCTGCCCATCCGCTACCTCGAGGGGGAGGGCAGGCTGGAGGCCACCCTCGAGG TCCAGGAGGTCTGA
Upstream 100 bases:
>100_bases GGTCCTCTCCTACGGGGAGGTCCTCTACCACGGCCCCCCCGAAGGGGTGAAGAAGGACCCCAAGGTGGTGGAGGCCTACC TGGGCCAGGGGTGAGGGCGT
Downstream 100 bases:
>100_bases GATGTTCGCCCTCTCCAAGCGCCTCACCGACGCCTTTAGCCTGCGCTTCGCCCGGGCGGTGCGGGAGACCTACCGGGAGG ACGAGGCCTACGCCAGCACC
Product: long-chain fatty acid--CoA ligase
Products: NA
Alternate protein names: Long-chain acyl-CoA synthetase; LACS [H]
Number of amino acids: Translated: 617; Mature: 617
Protein sequence:
>617_residues MRGTLLEHLVRHAKERPEAPALRVKRLGVWQKTSWRGLLDRVLSLAGGLSALGLKEGEVLAILGHNAPEWVEAELAAQVL GALPMGIYADAMPEEVGYFLEFTGARGIVVSDEEQLDKVYPHLHLVDFVLVWEEAGMSRHFRGKVRRFSQAFGDPKVGEE ALRRRRPEETALLAPTSGTTGRSKLAMLSHQNLLAGHEAVGKALGFQRGAWVFSYLPLPWIGEQMLTVVQSLVEGSTVHF PEDPTTLKEDLKEVQPDFFLAPPRLWEEMASFIQSRMADADPVKAFFYRAGMGALLEGANREFRGERVGLWLNLKRALFY PLIARPLRARLGLAACRIAVTGGAPLGPEVFTFFRALGLDIRQVYGQSETAAATTAHATGDAPPETVGPPLPGTEVRISE EGEIQVRGPQVFQGYFKQEKATRESFTEDGFFRTGDAGFFDERGHLVILGRVKEVGALADGTRFAPQFLENRLKYSPYIR EAVVLGHGRPFVTALVELDPENVQNWARRRGLPFTTYQSLTERLEVQALIAEEIRMVNQTLPEKLRIRRFALLPKELHPD DEEITRTRKVRRQIVEARYAPVIQALYGEGGRVSLSLPIRYLEGEGRLEATLEVQEV
Sequences:
>Translated_617_residues MRGTLLEHLVRHAKERPEAPALRVKRLGVWQKTSWRGLLDRVLSLAGGLSALGLKEGEVLAILGHNAPEWVEAELAAQVL GALPMGIYADAMPEEVGYFLEFTGARGIVVSDEEQLDKVYPHLHLVDFVLVWEEAGMSRHFRGKVRRFSQAFGDPKVGEE ALRRRRPEETALLAPTSGTTGRSKLAMLSHQNLLAGHEAVGKALGFQRGAWVFSYLPLPWIGEQMLTVVQSLVEGSTVHF PEDPTTLKEDLKEVQPDFFLAPPRLWEEMASFIQSRMADADPVKAFFYRAGMGALLEGANREFRGERVGLWLNLKRALFY PLIARPLRARLGLAACRIAVTGGAPLGPEVFTFFRALGLDIRQVYGQSETAAATTAHATGDAPPETVGPPLPGTEVRISE EGEIQVRGPQVFQGYFKQEKATRESFTEDGFFRTGDAGFFDERGHLVILGRVKEVGALADGTRFAPQFLENRLKYSPYIR EAVVLGHGRPFVTALVELDPENVQNWARRRGLPFTTYQSLTERLEVQALIAEEIRMVNQTLPEKLRIRRFALLPKELHPD DEEITRTRKVRRQIVEARYAPVIQALYGEGGRVSLSLPIRYLEGEGRLEATLEVQEV >Mature_617_residues MRGTLLEHLVRHAKERPEAPALRVKRLGVWQKTSWRGLLDRVLSLAGGLSALGLKEGEVLAILGHNAPEWVEAELAAQVL GALPMGIYADAMPEEVGYFLEFTGARGIVVSDEEQLDKVYPHLHLVDFVLVWEEAGMSRHFRGKVRRFSQAFGDPKVGEE ALRRRRPEETALLAPTSGTTGRSKLAMLSHQNLLAGHEAVGKALGFQRGAWVFSYLPLPWIGEQMLTVVQSLVEGSTVHF PEDPTTLKEDLKEVQPDFFLAPPRLWEEMASFIQSRMADADPVKAFFYRAGMGALLEGANREFRGERVGLWLNLKRALFY PLIARPLRARLGLAACRIAVTGGAPLGPEVFTFFRALGLDIRQVYGQSETAAATTAHATGDAPPETVGPPLPGTEVRISE EGEIQVRGPQVFQGYFKQEKATRESFTEDGFFRTGDAGFFDERGHLVILGRVKEVGALADGTRFAPQFLENRLKYSPYIR EAVVLGHGRPFVTALVELDPENVQNWARRRGLPFTTYQSLTERLEVQALIAEEIRMVNQTLPEKLRIRRFALLPKELHPD DEEITRTRKVRRQIVEARYAPVIQALYGEGGRVSLSLPIRYLEGEGRLEATLEVQEV
Specific function: Esterification, Concomitant With Transport, Of Exogenous Long-Chain Fatty Acids Into Metabolically Active CoA Thioesters For Subsequent Degradation Or Incorporation Into Phospholipids. [C]
COG id: COG1022
COG function: function code I; Long-chain acyl-CoA synthetases (AMP-forming)
Gene ontology:
Cell location: Partially Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI27477105, Length=611, Percent_Identity=29.6235679214403, Blast_Score=198, Evalue=1e-50, Organism=Homo sapiens, GI57165410, Length=589, Percent_Identity=28.6926994906621, Blast_Score=188, Evalue=2e-47, Organism=Homo sapiens, GI57165412, Length=589, Percent_Identity=28.8624787775891, Blast_Score=187, Evalue=4e-47, Organism=Homo sapiens, GI83745141, Length=605, Percent_Identity=25.6198347107438, Blast_Score=183, Evalue=5e-46, Organism=Homo sapiens, GI42794756, Length=588, Percent_Identity=25.5102040816327, Blast_Score=167, Evalue=2e-41, Organism=Homo sapiens, GI42794760, Length=588, Percent_Identity=25.5102040816327, Blast_Score=167, Evalue=2e-41, Organism=Homo sapiens, GI42794758, Length=588, Percent_Identity=25.5102040816327, Blast_Score=167, Evalue=2e-41, Organism=Homo sapiens, GI40807491, Length=569, Percent_Identity=28.1195079086116, Blast_Score=167, Evalue=3e-41, Organism=Homo sapiens, GI12669909, Length=625, Percent_Identity=23.68, Blast_Score=134, Evalue=3e-31, Organism=Homo sapiens, GI4758332, Length=625, Percent_Identity=23.68, Blast_Score=133, Evalue=5e-31, Organism=Homo sapiens, GI42794754, Length=627, Percent_Identity=23.444976076555, Blast_Score=112, Evalue=8e-25, Organism=Homo sapiens, GI42794752, Length=627, Percent_Identity=23.444976076555, Blast_Score=112, Evalue=8e-25, Organism=Homo sapiens, GI156151445, Length=540, Percent_Identity=22.7777777777778, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI187761345, Length=608, Percent_Identity=22.6973684210526, Blast_Score=81, Evalue=3e-15, Organism=Homo sapiens, GI187761343, Length=608, Percent_Identity=22.6973684210526, Blast_Score=81, Evalue=3e-15, Organism=Escherichia coli, GI1788107, Length=523, Percent_Identity=23.7093690248566, Blast_Score=87, Evalue=4e-18, Organism=Escherichia coli, GI1789201, Length=179, Percent_Identity=31.8435754189944, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI145693145, Length=168, Percent_Identity=27.9761904761905, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17510401, Length=628, Percent_Identity=26.7515923566879, Blast_Score=164, Evalue=1e-40, Organism=Caenorhabditis elegans, GI17541856, Length=596, Percent_Identity=25.1677852348993, Blast_Score=159, Evalue=5e-39, Organism=Caenorhabditis elegans, GI25147511, Length=627, Percent_Identity=24.7208931419458, Blast_Score=139, Evalue=5e-33, Organism=Caenorhabditis elegans, GI193204819, Length=622, Percent_Identity=25.08038585209, Blast_Score=137, Evalue=2e-32, Organism=Caenorhabditis elegans, GI17556552, Length=563, Percent_Identity=23.8010657193606, Blast_Score=132, Evalue=6e-31, Organism=Caenorhabditis elegans, GI17564090, Length=452, Percent_Identity=27.212389380531, Blast_Score=129, Evalue=7e-30, Organism=Caenorhabditis elegans, GI17553312, Length=614, Percent_Identity=24.9185667752443, Blast_Score=119, Evalue=6e-27, Organism=Caenorhabditis elegans, GI32563687, Length=175, Percent_Identity=34.8571428571429, Blast_Score=106, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17558820, Length=155, Percent_Identity=32.9032258064516, Blast_Score=98, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71985884, Length=163, Percent_Identity=33.7423312883436, Blast_Score=87, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17531443, Length=510, Percent_Identity=22.3529411764706, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17559526, Length=180, Percent_Identity=30.5555555555556, Blast_Score=74, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6320852, Length=665, Percent_Identity=26.1654135338346, Blast_Score=169, Evalue=2e-42, Organism=Saccharomyces cerevisiae, GI6324893, Length=530, Percent_Identity=23.2075471698113, Blast_Score=91, Evalue=5e-19, Organism=Saccharomyces cerevisiae, GI6322182, Length=494, Percent_Identity=21.0526315789474, Blast_Score=83, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6319699, Length=138, Percent_Identity=34.0579710144928, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI19921316, Length=619, Percent_Identity=28.2714054927302, Blast_Score=196, Evalue=4e-50, Organism=Drosophila melanogaster, GI17933690, Length=633, Percent_Identity=24.8025276461295, Blast_Score=189, Evalue=5e-48, Organism=Drosophila melanogaster, GI281366413, Length=586, Percent_Identity=26.4505119453925, Blast_Score=179, Evalue=6e-45, Organism=Drosophila melanogaster, GI24666501, Length=586, Percent_Identity=26.4505119453925, Blast_Score=178, Evalue=1e-44, Organism=Drosophila melanogaster, GI24666497, Length=586, Percent_Identity=26.4505119453925, Blast_Score=178, Evalue=1e-44, Organism=Drosophila melanogaster, GI62471679, Length=587, Percent_Identity=23.5093696763203, Blast_Score=102, Evalue=9e-22, Organism=Drosophila melanogaster, GI62471683, Length=587, Percent_Identity=23.5093696763203, Blast_Score=102, Evalue=9e-22, Organism=Drosophila melanogaster, GI62471685, Length=587, Percent_Identity=23.5093696763203, Blast_Score=102, Evalue=9e-22, Organism=Drosophila melanogaster, GI24586636, Length=587, Percent_Identity=23.5093696763203, Blast_Score=102, Evalue=9e-22, Organism=Drosophila melanogaster, GI62471681, Length=584, Percent_Identity=23.2876712328767, Blast_Score=102, Evalue=9e-22, Organism=Drosophila melanogaster, GI62471687, Length=584, Percent_Identity=23.2876712328767, Blast_Score=102, Evalue=9e-22, Organism=Drosophila melanogaster, GI24586634, Length=584, Percent_Identity=23.2876712328767, Blast_Score=102, Evalue=9e-22, Organism=Drosophila melanogaster, GI22026970, Length=584, Percent_Identity=23.2876712328767, Blast_Score=102, Evalue=9e-22, Organism=Drosophila melanogaster, GI62471689, Length=584, Percent_Identity=23.2876712328767, Blast_Score=102, Evalue=1e-21, Organism=Drosophila melanogaster, GI24581924, Length=491, Percent_Identity=21.7922606924644, Blast_Score=87, Evalue=4e-17, Organism=Drosophila melanogaster, GI24648260, Length=192, Percent_Identity=28.125, Blast_Score=69, Evalue=9e-12, Organism=Drosophila melanogaster, GI18859661, Length=193, Percent_Identity=29.5336787564767, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.3 [H]
Molecular weight: Translated: 68911; Mature: 68911
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGTLLEHLVRHAKERPEAPALRVKRLGVWQKTSWRGLLDRVLSLAGGLSALGLKEGEVL CCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCEE AILGHNAPEWVEAELAAQVLGALPMGIYADAMPEEVGYFLEFTGARGIVVSDEEQLDKVY EEECCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHHCEEEEECCCCCEEECCHHHHHHHC PHLHLVDFVLVWEEAGMSRHFRGKVRRFSQAFGDPKVGEEALRRRRPEETALLAPTSGTT CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEECCCCCC GRSKLAMLSHQNLLAGHEAVGKALGFQRGAWVFSYLPLPWIGEQMLTVVQSLVEGSTVHF CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEC PEDPTTLKEDLKEVQPDFFLAPPRLWEEMASFIQSRMADADPVKAFFYRAGMGALLEGAN CCCCHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHCCC REFRGERVGLWLNLKRALFYPLIARPLRARLGLAACRIAVTGGAPLGPEVFTFFRALGLD CCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCH IRQVYGQSETAAATTAHATGDAPPETVGPPLPGTEVRISEEGEIQVRGPQVFQGYFKQEK HHHHHCCCCHHHHEECCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHH ATRESFTEDGFFRTGDAGFFDERGHLVILGRVKEVGALADGTRFAPQFLENRLKYSPYIR HHHHHHCCCCCEECCCCCCCCCCCCEEEEECHHHHHHHCCCCHHHHHHHHHHHCCCHHHH EAVVLGHGRPFVTALVELDPENVQNWARRRGLPFTTYQSLTERLEVQALIAEEIRMVNQT HHHHCCCCCHHHHHEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LPEKLRIRRFALLPKELHPDDEEITRTRKVRRQIVEARYAPVIQALYGEGGRVSLSLPIR HHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE YLEGEGRLEATLEVQEV EECCCCCEEEEEEEECC >Mature Secondary Structure MRGTLLEHLVRHAKERPEAPALRVKRLGVWQKTSWRGLLDRVLSLAGGLSALGLKEGEVL CCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCEE AILGHNAPEWVEAELAAQVLGALPMGIYADAMPEEVGYFLEFTGARGIVVSDEEQLDKVY EEECCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHHCEEEEECCCCCEEECCHHHHHHHC PHLHLVDFVLVWEEAGMSRHFRGKVRRFSQAFGDPKVGEEALRRRRPEETALLAPTSGTT CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEECCCCCC GRSKLAMLSHQNLLAGHEAVGKALGFQRGAWVFSYLPLPWIGEQMLTVVQSLVEGSTVHF CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEC PEDPTTLKEDLKEVQPDFFLAPPRLWEEMASFIQSRMADADPVKAFFYRAGMGALLEGAN CCCCHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHCCC REFRGERVGLWLNLKRALFYPLIARPLRARLGLAACRIAVTGGAPLGPEVFTFFRALGLD CCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCH IRQVYGQSETAAATTAHATGDAPPETVGPPLPGTEVRISEEGEIQVRGPQVFQGYFKQEK HHHHHCCCCHHHHEECCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHH ATRESFTEDGFFRTGDAGFFDERGHLVILGRVKEVGALADGTRFAPQFLENRLKYSPYIR HHHHHHCCCCCEECCCCCCCCCCCCEEEEECHHHHHHHCCCCHHHHHHHHHHHCCCHHHH EAVVLGHGRPFVTALVELDPENVQNWARRRGLPFTTYQSLTERLEVQALIAEEIRMVNQT HHHHCCCCCHHHHHEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LPEKLRIRRFALLPKELHPDDEEITRTRKVRRQIVEARYAPVIQALYGEGGRVSLSLPIR HHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE YLEGEGRLEATLEVQEV EECCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]