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The map label for this gene is ugpB [H]

Identifier: 55980348

GI number: 55980348

Start: 360889

End: 362142

Strand: Direct

Name: ugpB [H]

Synonym: TTHA0379

Alternate gene names: 55980348

Gene position: 360889-362142 (Clockwise)

Preceding gene: 55980347

Following gene: 55980349

Centisome position: 19.51

GC content: 66.59

Gene sequence:

>1254_bases
ATGAAGAAGGCGCTTTTGCTGGTGGCGGCGCTGGGCGTGGCCTTCGCCCAGCAGGCCAAGCCGGAGGATGTGATCAAGGA
GCAGTGCGCCAGGGCCAAGGTGGTGGCCGAGCTCTGGCACGGTTTCACCGGCGGGGCCCCTAAAGCGGCCTTGGAGAACC
TGGTGGTGGAGTTCAACAAGGCCCAGCAGGGGCGGTGCGTCCGCCCCGTGCCCCAGGGGGGGTACCGGGACCTTTCCACC
AAGATCAAGGCGGCCTTCGCCGCCGGGAAGGTGCCCACCATGGCCCAGGCCTTTGAGAACAACATCGCCCTCTACCTCGA
GGCCAAGGCCCTTCTGCCCATAGAGTCCCTGGGGGTCAAGCTCCAAGGGGTGAACCTCACCTTCTTGAACGCCGTCCGCT
TCGGGGGCGTGGTCTACGGGGTGCCCTTCAACAAGAGCATCCAGGTCCTTTACTACAACAAGGACCTCCTGAAGAAGCAC
GGGGTTCCGGTGCCCGCGACCCTCGAGGAGTTCGTGGCCGCCGCAAAGAAGCTCTCCCGGGCCGAGGGCGGCCCCGTCTA
CTGGTTCCAGCCCGACGCCTCCACCTTCGCCTACTTCTTCTTCAACCTGGGCGGGAGCTACCTCAAGGACGGGAAGCTCG
TGCTGAACTCCAAGGAGGCGGTGGAGGCCCTCACCCTCCTGCAAAACGGGGTCAAGGAGGGGTGGGCCAAGCCCATCACC
TCGGGCTACATCAACCAGAACCTGGGCTCGGGGCCCTACGCCTTCAGCGTGGACACCTCCGCGGGCTACACCTACTACCT
CCGGGCGGCCAAGTTTGACCTGGGGGTGGCCACCCTGCCGGGCCGGACCAAGGGCCAGCCGGGCTACGGCCTCGTCCAGG
GCACCAACCTGGTGGTCTTCCGCCAGGCCTCCAAGGAGGAGCAGGCGGTGGCCAAGGACTTCCTGGAGTTCGTCCTCTCC
CCCAGGGCCCAGGCGGTCTTCGCCACGGCCACGGGCTACGTGCCCGTCACCGAGGGGGCCCTCAAGGACCCCGTCTACCA
GGCCTACGCCGCCGAGAACCCCGACTACGCCACCATCGTGCGCCAGAGCCGCTACGCCAAGTTTGAGCCCGCCTTGGCGG
AGTGGGAGCAGATCCGCTTTGACATCCTGGGCCAGGCCATCAAGGAGGCCATCCTCAACAAGGCCGATCCCAAGGCGGCC
TTGGACAGGGCCCAGAAGCTGGCGGAGGACCTCCTCTCCAGCAGGACCCGCTAG

Upstream 100 bases:

>100_bases
CAGAGGCAGTTCATTCAGGGGATCGCCCGCACGGGGCTGAAGTGAGCTTGAACGTGCCCTGACGCGGGGCAGGGTATACT
CTCCCCGGAGGTGTGAGGGT

Downstream 100 bases:

>100_bases
AGGCCCTTTCGCCTTACCGGTTCGGGCCCCCGCCCGCTTCGGGCGGGGTTAAACTTTGGGTATGCCCAAGGGGTATCACG
ACCGCGTGGCCTTCGTGGAC

Product: sugar ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MKKALLLVAALGVAFAQQAKPEDVIKEQCARAKVVAELWHGFTGGAPKAALENLVVEFNKAQQGRCVRPVPQGGYRDLST
KIKAAFAAGKVPTMAQAFENNIALYLEAKALLPIESLGVKLQGVNLTFLNAVRFGGVVYGVPFNKSIQVLYYNKDLLKKH
GVPVPATLEEFVAAAKKLSRAEGGPVYWFQPDASTFAYFFFNLGGSYLKDGKLVLNSKEAVEALTLLQNGVKEGWAKPIT
SGYINQNLGSGPYAFSVDTSAGYTYYLRAAKFDLGVATLPGRTKGQPGYGLVQGTNLVVFRQASKEEQAVAKDFLEFVLS
PRAQAVFATATGYVPVTEGALKDPVYQAYAAENPDYATIVRQSRYAKFEPALAEWEQIRFDILGQAIKEAILNKADPKAA
LDRAQKLAEDLLSSRTR

Sequences:

>Translated_417_residues
MKKALLLVAALGVAFAQQAKPEDVIKEQCARAKVVAELWHGFTGGAPKAALENLVVEFNKAQQGRCVRPVPQGGYRDLST
KIKAAFAAGKVPTMAQAFENNIALYLEAKALLPIESLGVKLQGVNLTFLNAVRFGGVVYGVPFNKSIQVLYYNKDLLKKH
GVPVPATLEEFVAAAKKLSRAEGGPVYWFQPDASTFAYFFFNLGGSYLKDGKLVLNSKEAVEALTLLQNGVKEGWAKPIT
SGYINQNLGSGPYAFSVDTSAGYTYYLRAAKFDLGVATLPGRTKGQPGYGLVQGTNLVVFRQASKEEQAVAKDFLEFVLS
PRAQAVFATATGYVPVTEGALKDPVYQAYAAENPDYATIVRQSRYAKFEPALAEWEQIRFDILGQAIKEAILNKADPKAA
LDRAQKLAEDLLSSRTR
>Mature_417_residues
MKKALLLVAALGVAFAQQAKPEDVIKEQCARAKVVAELWHGFTGGAPKAALENLVVEFNKAQQGRCVRPVPQGGYRDLST
KIKAAFAAGKVPTMAQAFENNIALYLEAKALLPIESLGVKLQGVNLTFLNAVRFGGVVYGVPFNKSIQVLYYNKDLLKKH
GVPVPATLEEFVAAAKKLSRAEGGPVYWFQPDASTFAYFFFNLGGSYLKDGKLVLNSKEAVEALTLLQNGVKEGWAKPIT
SGYINQNLGSGPYAFSVDTSAGYTYYLRAAKFDLGVATLPGRTKGQPGYGLVQGTNLVVFRQASKEEQAVAKDFLEFVLS
PRAQAVFATATGYVPVTEGALKDPVYQAYAAENPDYATIVRQSRYAKFEPALAEWEQIRFDILGQAIKEAILNKADPKAA
LDRAQKLAEDLLSSRTR

Specific function: Part of the ABC transporter complex ugpABCE involved in sn-glycerol-3-phosphate import [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=414, Percent_Identity=27.2946859903382, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 45290; Mature: 45290

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKALLLVAALGVAFAQQAKPEDVIKEQCARAKVVAELWHGFTGGAPKAALENLVVEFNK
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
AQQGRCVRPVPQGGYRDLSTKIKAAFAAGKVPTMAQAFENNIALYLEAKALLPIESLGVK
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEEEECCCCCHHHHCEE
LQGVNLTFLNAVRFGGVVYGVPFNKSIQVLYYNKDLLKKHGVPVPATLEEFVAAAKKLSR
EECCCCCEEHHHHHCCEEEECCCCCCEEEEEECHHHHHHCCCCCCHHHHHHHHHHHHHHH
AEGGPVYWFQPDASTFAYFFFNLGGSYLKDGKLVLNSKEAVEALTLLQNGVKEGWAKPIT
CCCCCEEEECCCCCHHHHHHHHCCCCHHCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCC
SGYINQNLGSGPYAFSVDTSAGYTYYLRAAKFDLGVATLPGRTKGQPGYGLVQGTNLVVF
CCHHCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEECCCCCCCCCCCEEEECCEEEEE
RQASKEEQAVAKDFLEFVLSPRAQAVFATATGYVPVTEGALKDPVYQAYAAENPDYATIV
ECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEECCCCCHHCHHHHHHHCCCCCHHHHH
RQSRYAKFEPALAEWEQIRFDILGQAIKEAILNKADPKAALDRAQKLAEDLLSSRTR
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKALLLVAALGVAFAQQAKPEDVIKEQCARAKVVAELWHGFTGGAPKAALENLVVEFNK
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
AQQGRCVRPVPQGGYRDLSTKIKAAFAAGKVPTMAQAFENNIALYLEAKALLPIESLGVK
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEEEECCCCCHHHHCEE
LQGVNLTFLNAVRFGGVVYGVPFNKSIQVLYYNKDLLKKHGVPVPATLEEFVAAAKKLSR
EECCCCCEEHHHHHCCEEEECCCCCCEEEEEECHHHHHHCCCCCCHHHHHHHHHHHHHHH
AEGGPVYWFQPDASTFAYFFFNLGGSYLKDGKLVLNSKEAVEALTLLQNGVKEGWAKPIT
CCCCCEEEECCCCCHHHHHHHHCCCCHHCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCC
SGYINQNLGSGPYAFSVDTSAGYTYYLRAAKFDLGVATLPGRTKGQPGYGLVQGTNLVVF
CCHHCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEECCCCCCCCCCCEEEECCEEEEE
RQASKEEQAVAKDFLEFVLSPRAQAVFATATGYVPVTEGALKDPVYQAYAAENPDYATIV
ECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEECCCCCHHCHHHHHHHCCCCCHHHHH
RQSRYAKFEPALAEWEQIRFDILGQAIKEAILNKADPKAALDRAQKLAEDLLSSRTR
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481431 [H]