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The map label for this gene is rlmH [H]

Identifier: 55980197

GI number: 55980197

Start: 221403

End: 221816

Strand: Reverse

Name: rlmH [H]

Synonym: TTHA0228

Alternate gene names: 55980197

Gene position: 221816-221403 (Counterclockwise)

Preceding gene: 55980203

Following gene: 55980196

Centisome position: 11.99

GC content: 71.98

Gene sequence:

>414_bases
GTGCGGCTTCGGGTGGTGGCCGTGGGAAGGCCCCGGCTGGCCTACGCCCGGCTCGGGGTGGAGGAGTACGCGAGGCGCAT
GCGGCGGTACGCGCCTTTGGACCTGGTCTTCGTCCGGAAAGGGGAGGAGCTCCTCCCCAAGGCGGAGGGCCACCGGAAGG
TGGTCCTGGACGAGCGGGGGAGGCTCTTGACCACCGAGGAGCTCTACCGGAGGCTCCTCGCCTGGGAGGGGGAGCGGGTG
GCCTTCCTCGTGGGCGGGGCCGAGGGGCACCCGGAGGCGGTGCGGGAGGAGGCCGACCTCCTCCTTTCCCTCTCCCCCCT
CACCCTGCAGCACGAGCTCGCCCTCCTCGTCCTCATGGAGCAGCTCTACCGCGTCCTGACCTTGAGGGCGGGGCACCCCT
ACCACCGGCCATGA

Upstream 100 bases:

>100_bases
GGGAAGCCCGCCCTGGGTAAGGGCCTCGGGCCTCCTTTTCGGGGGTGGGGCTGGATCCCACTTTCCCTTCCCCCTGAGTA
TACCGGGTTAGGATCAGGGG

Downstream 100 bases:

>100_bases
CCTACGAGGCCTTCGTGGAGCTGGTGGAGAGGCTCTGGGAGGAGGTCCCCGAGGACTTCAAGCGGGGGCTTCAGGGGGTG
CACGTCTTCCCCGAGGCCAA

Product: hypothetical protein

Products: NA

Alternate protein names: 23S rRNA m3Psi1915 methyltransferase; rRNA (pseudouridine-N3-)-methyltransferase rlmH [H]

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MRLRVVAVGRPRLAYARLGVEEYARRMRRYAPLDLVFVRKGEELLPKAEGHRKVVLDERGRLLTTEELYRRLLAWEGERV
AFLVGGAEGHPEAVREEADLLLSLSPLTLQHELALLVLMEQLYRVLTLRAGHPYHRP

Sequences:

>Translated_137_residues
MRLRVVAVGRPRLAYARLGVEEYARRMRRYAPLDLVFVRKGEELLPKAEGHRKVVLDERGRLLTTEELYRRLLAWEGERV
AFLVGGAEGHPEAVREEADLLLSLSPLTLQHELALLVLMEQLYRVLTLRAGHPYHRP
>Mature_137_residues
MRLRVVAVGRPRLAYARLGVEEYARRMRRYAPLDLVFVRKGEELLPKAEGHRKVVLDERGRLLTTEELYRRLLAWEGERV
AFLVGGAEGHPEAVREEADLLLSLSPLTLQHELALLVLMEQLYRVLTLRAGHPYHRP

Specific function: Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA [H]

COG id: COG1576

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase rlmH family [H]

Homologues:

Organism=Escherichia coli, GI1786855, Length=154, Percent_Identity=33.7662337662338, Blast_Score=84, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003742 [H]

Pfam domain/function: PF02590 SPOUT_MTase [H]

EC number: NA

Molecular weight: Translated: 15830; Mature: 15830

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLRVVAVGRPRLAYARLGVEEYARRMRRYAPLDLVFVRKGEELLPKAEGHRKVVLDERG
CEEEEEEECCCCHHHHHCCHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCEEEEECCCC
RLLTTEELYRRLLAWEGERVAFLVGGAEGHPEAVREEADLLLSLSPLTLQHELALLVLME
CEECHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHH
QLYRVLTLRAGHPYHRP
HHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRLRVVAVGRPRLAYARLGVEEYARRMRRYAPLDLVFVRKGEELLPKAEGHRKVVLDERG
CEEEEEEECCCCHHHHHCCHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCEEEEECCCC
RLLTTEELYRRLLAWEGERVAFLVGGAEGHPEAVREEADLLLSLSPLTLQHELALLVLME
CEECHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHH
QLYRVLTLRAGHPYHRP
HHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA