| Definition | Thermus thermophilus HB8 chromosome, complete genome. |
|---|---|
| Accession | NC_006461 |
| Length | 1,849,742 |
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The map label for this gene is 55980182
Identifier: 55980182
GI number: 55980182
Start: 208824
End: 209621
Strand: Reverse
Name: 55980182
Synonym: TTHA0213
Alternate gene names: NA
Gene position: 209621-208824 (Counterclockwise)
Preceding gene: 55980183
Following gene: 55980181
Centisome position: 11.33
GC content: 70.55
Gene sequence:
>798_bases ATGTGGCGGATTATGGCCCTGCTTTCGCTTTTCCTTGCGGCCTGCAACCTTTCCCTGAGCCCGCCTTTGGCGGGGGACCT CCCCGTGGGGGGGAACCTGGTGGCCACCCTGCCCCCGGCCCAGGGGGCCTCCGGCGGAAGCCTGCGCCCGGGGGTGGCCG TCTTCCGCCTTCTTCCCGACCAGGACGGGGCCGTGGAGGTGGCGGCGGTTTCGGCTGGGCTAGAGCTCAGCGCCCGGCTC CGCCTGGTCCTTCTGGACGAAAGGGGCGTGGTCCAGGCGGTGAGCGTGGCCCGGAACTGGTTTGGGGCCTACCCCGAGGT GGCCCCCTTAGGCCTGAGGCCCCAGGGGATCACCACCGACCCCGGGGTGCGCCTTAACTTCCGGGGGCAGGCGGGCCAGG CCTACCACCTGCGGGTGGAGAACTACGCCCTGGCGGAGGACCGGGTGAACCTCTCCGCCACGGGGTTTGTGCCCAACCCC TCGGGCAAGGGGGAGGCGTTGACCTCGGGAAGCGTCCAAGGGGCCATTGAGTTCGTCGGGGAGTTTGACCGCTACGACGT TTCCGGGGCCGGGGGCTACCTGCGTTTTGTCTACGCGGGCCCTCTGGACCTGGTGGCCCTCCTCTACAACGGTCCCGACG ACCTCTACCCGAGGGCTTTGGACCCGGTGCGAAACTGCGCCCCCCTCTCCCCGGCCACCCTCCTCGTGGTCCGGGACCGG GGCCTCGCCCGGGCGGGGTTTGACGAGGAGGGGAGCGGCCGTTACACCCTGGAGCTCTCCTCCACGCCCTGCCCTTAG
Upstream 100 bases:
>100_bases CAAGCCGGGGCTTTGGGGAGGCTTTTGCACCTAAAGGGCACCTTAACCCGGCCGGGCCCTTCCCCGGGTATCCTGAGGGG AAAGAGGGAGGTGGAGGCGG
Downstream 100 bases:
>100_bases GAGGATCATGAGGGCTAGATGAAGGTAGTTTAGCTTCTTGTAAGAAAACCTGCCGCGGCGCGTTCCCGTGCGCTGCGGCT TTTTGAGTTTGCAAAAGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 265
Protein sequence:
>265_residues MWRIMALLSLFLAACNLSLSPPLAGDLPVGGNLVATLPPAQGASGGSLRPGVAVFRLLPDQDGAVEVAAVSAGLELSARL RLVLLDERGVVQAVSVARNWFGAYPEVAPLGLRPQGITTDPGVRLNFRGQAGQAYHLRVENYALAEDRVNLSATGFVPNP SGKGEALTSGSVQGAIEFVGEFDRYDVSGAGGYLRFVYAGPLDLVALLYNGPDDLYPRALDPVRNCAPLSPATLLVVRDR GLARAGFDEEGSGRYTLELSSTPCP
Sequences:
>Translated_265_residues MWRIMALLSLFLAACNLSLSPPLAGDLPVGGNLVATLPPAQGASGGSLRPGVAVFRLLPDQDGAVEVAAVSAGLELSARL RLVLLDERGVVQAVSVARNWFGAYPEVAPLGLRPQGITTDPGVRLNFRGQAGQAYHLRVENYALAEDRVNLSATGFVPNP SGKGEALTSGSVQGAIEFVGEFDRYDVSGAGGYLRFVYAGPLDLVALLYNGPDDLYPRALDPVRNCAPLSPATLLVVRDR GLARAGFDEEGSGRYTLELSSTPCP >Mature_265_residues MWRIMALLSLFLAACNLSLSPPLAGDLPVGGNLVATLPPAQGASGGSLRPGVAVFRLLPDQDGAVEVAAVSAGLELSARL RLVLLDERGVVQAVSVARNWFGAYPEVAPLGLRPQGITTDPGVRLNFRGQAGQAYHLRVENYALAEDRVNLSATGFVPNP SGKGEALTSGSVQGAIEFVGEFDRYDVSGAGGYLRFVYAGPLDLVALLYNGPDDLYPRALDPVRNCAPLSPATLLVVRDR GLARAGFDEEGSGRYTLELSSTPCP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27832; Mature: 27832
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWRIMALLSLFLAACNLSLSPPLAGDLPVGGNLVATLPPAQGASGGSLRPGVAVFRLLPD CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECC QDGAVEVAAVSAGLELSARLRLVLLDERGVVQAVSVARNWFGAYPEVAPLGLRPQGITTD CCCCEEEEEEECCCEEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC PGVRLNFRGQAGQAYHLRVENYALAEDRVNLSATGFVPNPSGKGEALTSGSVQGAIEFVG CCEEEEEECCCCCEEEEEECCEEEECCCCCEEEEECCCCCCCCCCEEECCCHHHHHHHHH EFDRYDVSGAGGYLRFVYAGPLDLVALLYNGPDDLYPRALDPVRNCAPLSPATLLVVRDR CCCCEECCCCCCEEEEEEECHHHEEEEEECCCCCCCCCHHHHHHHCCCCCCEEEEEECCC GLARAGFDEEGSGRYTLELSSTPCP CCEECCCCCCCCCEEEEEECCCCCC >Mature Secondary Structure MWRIMALLSLFLAACNLSLSPPLAGDLPVGGNLVATLPPAQGASGGSLRPGVAVFRLLPD CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECC QDGAVEVAAVSAGLELSARLRLVLLDERGVVQAVSVARNWFGAYPEVAPLGLRPQGITTD CCCCEEEEEEECCCEEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC PGVRLNFRGQAGQAYHLRVENYALAEDRVNLSATGFVPNPSGKGEALTSGSVQGAIEFVG CCEEEEEECCCCCEEEEEECCEEEECCCCCEEEEECCCCCCCCCCEEECCCHHHHHHHHH EFDRYDVSGAGGYLRFVYAGPLDLVALLYNGPDDLYPRALDPVRNCAPLSPATLLVVRDR CCCCEECCCCCCEEEEEEECHHHEEEEEECCCCCCCCCHHHHHHHCCCCCCEEEEEECCC GLARAGFDEEGSGRYTLELSSTPCP CCEECCCCCCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA