Click here to switch to the map view.

The map label for this gene is yicL [C]

Identifier: 55980173

GI number: 55980173

Start: 201320

End: 202132

Strand: Reverse

Name: yicL [C]

Synonym: TTHA0204

Alternate gene names: 55980173

Gene position: 202132-201320 (Counterclockwise)

Preceding gene: 55980174

Following gene: 55980172

Centisome position: 10.93

GC content: 72.45

Gene sequence:

>813_bases
GTGATCCCCGTGGCCCTCGCCGCCCTGCTTTGGGGGCTTGGGGGGGCTTTGGCGGGGCGCTTCATGCGGGAGATCCCCCC
GGAGGTCCTCATCCCCTTGCGCTTCCTCCTGAGCTTCCTCCTCCTTCTGCCCCTCGTCCTCGCCCGCCCGCCCCACCCCG
ACGAGAGGCGGCGGCTCCTCGGGGTGGGCCTCGCCCTCTCCGGGGCCCAGGCCTTTTACTACCTGGCCATCCACGCCACC
ACGGTGGCCACGGGGATCTTCCTCCAGTACCTCGCCCCCTCCCTCCTCACCCTCTACGCCCTCCTCAAGGGGGAGAGGCT
TCCCGGGAGGGCCCTTTTTGGGGTGGGGCTCGCCCTCCTGGGGGCCTACCTCCTGGTGGTGGGGCCCGAGGGGCTTCGGG
GAGGGGCTTTAGGCGTGGCCTACGGCCTCCTTTCCGCCGTTTCCTTCGCGGCCTACGCCGCTTTCGCCCACGGCCTCCGC
ACGCCCGCCTTCGTGGCCCTCGGGGTGGCCACGGGGGTGGGGGCCCTCCTCTCCCTTCCCGTCCTCGGGCTTCACGGGGA
GAAGGTGCTGGCCCTCGGCCCGGCCCAGTGGGGGGCGGTGGCCTACCTGGTCACCCTGGGCACGGTGGTCCCCTTCGGCC
TCTTCCTCCTCGGGGTGCGGACCCTCCCCGCCCGCACCGCCACCCTGGTGGCCATGCTGGAGCCCCTGAGCGGGGCCCTC
TTCGCCTGGCCCTTGGCCGGGGAGCCCTTGAGGCCCGAAGCCCTTCTTGGAGGCGGTATGATCCTTGGGGGCGTGTGGCT
CAACCGGAGGTGA

Upstream 100 bases:

>100_bases
TCGCCTACTTCCTCTTCGGGGAGCTCCCCGGAAGCCGGGTCCTCCTCGGGGCCCTGATCCTCCTCGTGGGCGTGGCGCTG
GCCGTGGTGGGGGGTAGGCG

Downstream 100 bases:

>100_bases
TATGGCGGCGCGGGTTTTCTTTCTCTTCGCCTTAGGGTATTTCCTCTCCTATTTCTACCGCTCGGCGAACGCGGTGCTCG
CCAAGGACCTCTCCCAGGAG

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MIPVALAALLWGLGGALAGRFMREIPPEVLIPLRFLLSFLLLLPLVLARPPHPDERRRLLGVGLALSGAQAFYYLAIHAT
TVATGIFLQYLAPSLLTLYALLKGERLPGRALFGVGLALLGAYLLVVGPEGLRGGALGVAYGLLSAVSFAAYAAFAHGLR
TPAFVALGVATGVGALLSLPVLGLHGEKVLALGPAQWGAVAYLVTLGTVVPFGLFLLGVRTLPARTATLVAMLEPLSGAL
FAWPLAGEPLRPEALLGGGMILGGVWLNRR

Sequences:

>Translated_270_residues
MIPVALAALLWGLGGALAGRFMREIPPEVLIPLRFLLSFLLLLPLVLARPPHPDERRRLLGVGLALSGAQAFYYLAIHAT
TVATGIFLQYLAPSLLTLYALLKGERLPGRALFGVGLALLGAYLLVVGPEGLRGGALGVAYGLLSAVSFAAYAAFAHGLR
TPAFVALGVATGVGALLSLPVLGLHGEKVLALGPAQWGAVAYLVTLGTVVPFGLFLLGVRTLPARTATLVAMLEPLSGAL
FAWPLAGEPLRPEALLGGGMILGGVWLNRR
>Mature_270_residues
MIPVALAALLWGLGGALAGRFMREIPPEVLIPLRFLLSFLLLLPLVLARPPHPDERRRLLGVGLALSGAQAFYYLAIHAT
TVATGIFLQYLAPSLLTLYALLKGERLPGRALFGVGLALLGAYLLVVGPEGLRGGALGVAYGLLSAVSFAAYAAFAHGLR
TPAFVALGVATGVGALLSLPVLGLHGEKVLALGPAQWGAVAYLVTLGTVVPFGLFLLGVRTLPARTATLVAMLEPLSGAL
FAWPLAGEPLRPEALLGGGMILGGVWLNRR

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1790092, Length=250, Percent_Identity=26.8, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004779
- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 28046; Mature: 28046

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPVALAALLWGLGGALAGRFMREIPPEVLIPLRFLLSFLLLLPLVLARPPHPDERRRLL
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
GVGLALSGAQAFYYLAIHATTVATGIFLQYLAPSLLTLYALLKGERLPGRALFGVGLALL
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
GAYLLVVGPEGLRGGALGVAYGLLSAVSFAAYAAFAHGLRTPAFVALGVATGVGALLSLP
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
VLGLHGEKVLALGPAQWGAVAYLVTLGTVVPFGLFLLGVRTLPARTATLVAMLEPLSGAL
CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCE
FAWPLAGEPLRPEALLGGGMILGGVWLNRR
EEECCCCCCCCCHHHHCCCCEEECEEECCC
>Mature Secondary Structure
MIPVALAALLWGLGGALAGRFMREIPPEVLIPLRFLLSFLLLLPLVLARPPHPDERRRLL
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
GVGLALSGAQAFYYLAIHATTVATGIFLQYLAPSLLTLYALLKGERLPGRALFGVGLALL
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
GAYLLVVGPEGLRGGALGVAYGLLSAVSFAAYAAFAHGLRTPAFVALGVATGVGALLSLP
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
VLGLHGEKVLALGPAQWGAVAYLVTLGTVVPFGLFLLGVRTLPARTATLVAMLEPLSGAL
CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCE
FAWPLAGEPLRPEALLGGGMILGGVWLNRR
EEECCCCCCCCCHHHHCCCCEEECEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]