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The map label for this gene is cspLA [H]

Identifier: 55980144

GI number: 55980144

Start: 169065

End: 169286

Strand: Direct

Name: cspLA [H]

Synonym: TTHA0175

Alternate gene names: 55980144

Gene position: 169065-169286 (Clockwise)

Preceding gene: 55980143

Following gene: 55980145

Centisome position: 9.14

GC content: 64.41

Gene sequence:

>222_bases
ATGCAGAAGGGTCGGGTCAAGTGGTTCAACGCGGAAAAGGGCTACGGCTTCATTGAGCGGGAAGGCGACACGGACGTCTT
CGTCCACTACACCGCCATCAACGCCAAGGGGTTCCGCACCCTCAACGAGGGGGACATCGTCACCTTTGACGTGGAGCCGG
GCCGGAACGGCAAGGGCCCCCAGGCGGTCAACGTCACGGTGGTGGAGCCCGCGCGGCGCTAA

Upstream 100 bases:

>100_bases
AGTGGGGCATTCCGGGTCGCTTCAGGGTGACCCCAAGGGTCTAAAGCCAACCCTTAAGCCCCGGATGCGGGCCCTCGGGC
CCGGGGAAAGAAGGAGCGGT

Downstream 100 bases:

>100_bases
GCCATAGGACGGCCAAGGCCCTGGACTGGGTCCAGGGCCTTTTTCACATGCCTCTCAGGGGGTGCGGGGTAGCATGGGGG
CGATGCACGTCCTGACCCTG

Product: cold shock protein

Products: NA

Alternate protein names: CspL [H]

Number of amino acids: Translated: 73; Mature: 73

Protein sequence:

>73_residues
MQKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKGFRTLNEGDIVTFDVEPGRNGKGPQAVNVTVVEPARR

Sequences:

>Translated_73_residues
MQKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKGFRTLNEGDIVTFDVEPGRNGKGPQAVNVTVVEPARR
>Mature_73_residues
MQKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKGFRTLNEGDIVTFDVEPGRNGKGPQAVNVTVVEPARR

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=55.2238805970149, Blast_Score=74, Evalue=1e-15,
Organism=Escherichia coli, GI1787839, Length=67, Percent_Identity=53.7313432835821, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=54.5454545454545, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=53.030303030303, Blast_Score=69, Evalue=6e-14,
Organism=Escherichia coli, GI1786841, Length=67, Percent_Identity=53.7313432835821, Blast_Score=69, Evalue=7e-14,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=51.5151515151515, Blast_Score=65, Evalue=9e-13,
Organism=Escherichia coli, GI1787107, Length=71, Percent_Identity=46.4788732394366, Blast_Score=64, Evalue=1e-12,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 8185; Mature: 8185

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKGFRTLNEGDIVTFDVEPGRNGKGP
CCCCCEEEEECCCCCEEEEECCCCEEEEEEEEECCCCCEEECCCCEEEEECCCCCCCCCC
QAVNVTVVEPARR
CEEEEEEECCCCC
>Mature Secondary Structure
MQKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKGFRTLNEGDIVTFDVEPGRNGKGP
CCCCCEEEEECCCCCEEEEECCCCEEEEEEEEECCCCCEEECCCCEEEEECCCCCCCCCC
QAVNVTVVEPARR
CEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669; 9439003 [H]