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The map label for this gene is holB [H]

Identifier: 54297310

GI number: 54297310

Start: 1508115

End: 1509020

Strand: Direct

Name: holB [H]

Synonym: lpp1355

Alternate gene names: 54297310

Gene position: 1508115-1509020 (Clockwise)

Preceding gene: 54297309

Following gene: 54297311

Centisome position: 43.04

GC content: 35.32

Gene sequence:

>906_bases
ATGATTACTTATCAAGAACAATGGCAGAAAATGCAAATGGCCTTGGCGGTAAGACGAATTCCTCAAGCCATGCTATTTTT
GGGTTCTTTGCATTGTGGTCTTATAGAATTTACAAATCAAGTGATCAAATTACTCTTGTGTAAAATAAAACAGAATGAGC
CTTGTTTGACTTGCATGGATTGCCAAATGATAGAGCGTTTTGAGCATCCGGATGTGGAATGGATTAAGCCTGAAAGAAGC
GGTGGTATTATTAAAATTGATCAAATTAGGGGATTGCAGAGCACGGCGTTTCTAACACCACAGAGGACTAATCATAAACT
TATAATTATCGAATCAGCTGAATCAATGAATATTGCGGCATCAAATGCCTTATTGAAAATTCTGGAAGAGCCAGCGCAAC
ATACTATCTTTATTTTATTAGCGCAACAAATTGGCAATATACCACCCACCGTATTGAGCCGATGCCAAATGACGCAATTT
GCTGTTTTTGATGAGTTGCCTTACAACAATTTATTGGCTTTAGGAGAGTACTATACTCAGGAATCGAATAGCACAATGGT
CTTCAAGCATTCAGAATCCATTTTAGAAGGATTGATTGCAATTATTGAGCGAAGAGAGCATCCATGCACTTTGGCTGCAC
AATGGATTCAACATGAATTAGGTGCTTTTTTGTGGTTTTTATATTTGCTCTATTCTCAACTACAATATATGCATTTGTTT
CGAGTGGCTTATTCTGGTACGTTAAAAGAACAATTGAATAAGCTATCCTCATTACTCAATCCGGTTATGATTTTTGCCCA
AGTAGATAAAATCAATACTTTGTTAAGAAAATTAAGCCATAATATGAATATGAATCATACTTTGGTTTTGGAAGATTTAT
TATTTTCTTTGGTTGTTGATTATTAA

Upstream 100 bases:

>100_bases
AACAAAACCCGGAAATTATGATGATTGATGCTAACAGGTCTTTGGATGAGGTTCAATCTTCCATTCAATCAGTAATCGAG
GAGTTTATAGAGCATAACCT

Downstream 100 bases:

>100_bases
TTGAGTTTAAAGGAATTAAACCATTGCGTGTGAACCGAGTTTTTATTAAGCAACTGAAGTAAGCAAGATAATTAGTTAAA
ACAGGACTATTCAAGGAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MITYQEQWQKMQMALAVRRIPQAMLFLGSLHCGLIEFTNQVIKLLLCKIKQNEPCLTCMDCQMIERFEHPDVEWIKPERS
GGIIKIDQIRGLQSTAFLTPQRTNHKLIIIESAESMNIAASNALLKILEEPAQHTIFILLAQQIGNIPPTVLSRCQMTQF
AVFDELPYNNLLALGEYYTQESNSTMVFKHSESILEGLIAIIERREHPCTLAAQWIQHELGAFLWFLYLLYSQLQYMHLF
RVAYSGTLKEQLNKLSSLLNPVMIFAQVDKINTLLRKLSHNMNMNHTLVLEDLLFSLVVDY

Sequences:

>Translated_301_residues
MITYQEQWQKMQMALAVRRIPQAMLFLGSLHCGLIEFTNQVIKLLLCKIKQNEPCLTCMDCQMIERFEHPDVEWIKPERS
GGIIKIDQIRGLQSTAFLTPQRTNHKLIIIESAESMNIAASNALLKILEEPAQHTIFILLAQQIGNIPPTVLSRCQMTQF
AVFDELPYNNLLALGEYYTQESNSTMVFKHSESILEGLIAIIERREHPCTLAAQWIQHELGAFLWFLYLLYSQLQYMHLF
RVAYSGTLKEQLNKLSSLLNPVMIFAQVDKINTLLRKLSHNMNMNHTLVLEDLLFSLVVDY
>Mature_301_residues
MITYQEQWQKMQMALAVRRIPQAMLFLGSLHCGLIEFTNQVIKLLLCKIKQNEPCLTCMDCQMIERFEHPDVEWIKPERS
GGIIKIDQIRGLQSTAFLTPQRTNHKLIIIESAESMNIAASNALLKILEEPAQHTIFILLAQQIGNIPPTVLSRCQMTQF
AVFDELPYNNLLALGEYYTQESNSTMVFKHSESILEGLIAIIERREHPCTLAAQWIQHELGAFLWFLYLLYSQLQYMHLF
RVAYSGTLKEQLNKLSSLLNPVMIFAQVDKINTLLRKLSHNMNMNHTLVLEDLLFSLVVDY

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria [H]

COG id: COG0470

COG function: function code L; ATPase involved in DNA replication

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786676, Length=143, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004622 [H]

Pfam domain/function: NA

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 34756; Mature: 34756

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITYQEQWQKMQMALAVRRIPQAMLFLGSLHCGLIEFTNQVIKLLLCKIKQNEPCLTCMD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHH
CQMIERFEHPDVEWIKPERSGGIIKIDQIRGLQSTAFLTPQRTNHKLIIIESAESMNIAA
HHHHHHCCCCCCEEECCCCCCCEEEEHHHCCCCHHEEECCCCCCCEEEEEECCCCCCHHH
SNALLKILEEPAQHTIFILLAQQIGNIPPTVLSRCQMTQFAVFDELPYNNLLALGEYYTQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
ESNSTMVFKHSESILEGLIAIIERREHPCTLAAQWIQHELGAFLWFLYLLYSQLQYMHLF
CCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVAYSGTLKEQLNKLSSLLNPVMIFAQVDKINTLLRKLSHNMNMNHTLVLEDLLFSLVVD
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Y
C
>Mature Secondary Structure
MITYQEQWQKMQMALAVRRIPQAMLFLGSLHCGLIEFTNQVIKLLLCKIKQNEPCLTCMD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHH
CQMIERFEHPDVEWIKPERSGGIIKIDQIRGLQSTAFLTPQRTNHKLIIIESAESMNIAA
HHHHHHCCCCCCEEECCCCCCCEEEEHHHCCCCHHEEECCCCCCCEEEEEECCCCCCHHH
SNALLKILEEPAQHTIFILLAQQIGNIPPTVLSRCQMTQFAVFDELPYNNLLALGEYYTQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
ESNSTMVFKHSESILEGLIAIIERREHPCTLAAQWIQHELGAFLWFLYLLYSQLQYMHLF
CCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVAYSGTLKEQLNKLSSLLNPVMIFAQVDKINTLLRKLSHNMNMNHTLVLEDLLFSLVVD
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Y
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]