Click here to switch to the map view.

The map label for this gene is ccmF [H]

Identifier: 54296882

GI number: 54296882

Start: 1027993

End: 1029945

Strand: Direct

Name: ccmF [H]

Synonym: lpp0923

Alternate gene names: 54296882

Gene position: 1027993-1029945 (Clockwise)

Preceding gene: 54296881

Following gene: 54296883

Centisome position: 29.34

GC content: 41.99

Gene sequence:

>1953_bases
ATGATAGCGGAATTAGGGCTGTTTTTTTTGGTTTTGGCTTTAGTGGCTTCTTTGATGTTAGCTTTGATCCCATTGGCGGG
TTTGCAATTCAATCGGAAAGACTGGATTGATTCCTCCAGGAATTATGTCGTGCTGCAATTTTTATTTGTGGCATGTGCTT
ACCTATGTCTCACGGCCTGTTTTTTGATGGATGATTTTTCGGTGATCTATGTGCTGAATAATTCCAGCTTATTGCTCCCA
TGGTTTTATAAATTTTGTGCTGTGTGGGGTGGGCATGAAGGTTCCATGCTGTTATGGGTCGCTATCCTTAGTTTTTGGAT
GATCCTGGTTTGTTTTTTTAGCTCAAGCCTTGATACGGAAATGCGCGCTCGGGTATTAGTTATTTTAGGTTGGCTAAGTA
TTGGTTTTATTCTTTTTTTGTTAATGACTTCCAATCCTTTCTTGCGCCAATTTCAAGTATTGAATACACAGGGCCGTGAT
CTGAATCCATTGCTGCAAGATCCTGGCTTTTTATTCCATCCTCCTATGTTGTACATGGGATATGTAGGGTTTTGTGTCGC
TTTTGCTTTTGCTATTGCCGCTTTATGGGCAGGGAAAGTAGAAACCAGTTGGTCTAAATGGACCAGACCCTGGACTCTGG
CTGCCTGGTGTTGTTTAACCGCGGGAATTACTTTAGGCAGTTGGTGGGCTTATAGAGAATTAGGCTGGGGTGGTTGGTGG
TTTTGGGATCCTGTAGAAAACGCTTCTTTTATGCCCTGGCTGGTTGGTACGGCACTATTGCATTCTTTGGCAGTTACAGA
GCAACGCCAGCAATTTAAAGCGTGGACCATGTTGCTTGCAATCGCTGCTTTTTCTTTAAGTTTAATTGGTACTTTTCTTG
TTCGCTCTGGAGTTTTAACTTCAGTTCATGCCTTTGCGGTTGATCCTCAGCGGGGATTATATATTCTGGGATTTTTGTTA
TTCGTCATTGGGGGTTCTTTAACATTGTTTCTTTTCAGAGCCCAAACCTTGCAAGTCAATAAACATCCTGGCTTATTATC
CCGAGAAAGTGCGTTGTTGTTAAACAATGTGTTTTTAGTGGTTATTATGCTGACGGTATTAATGGGCACGGTTTATCCAT
TGCTGGTGGAAGGGTTAGGGTTAGGTAAATTATCCGTTGGAGCGCCCTATTTTAATGCAGTATTTGTTCCATTAATGATT
CCTTTATTGTTGCTAATGGGGTTAGGTGTCCGTTTGAAATGGCAGAATGATTGTTGGAGGGATGTCTTCAGAAAGCTAAA
TCGTATTTTTTTGCTTAGTCTGATATTGCCTGTCATTTTACTATTCTGTACCTCAACTGAAATACACCTTACAGCCCTTT
TGGGATTAATTTTGGCATTCTGGGTTTTGTTGAGTACTGCTAATGCGGCGTATCACAAAGTCAGGGATAGAGGGGTGGCA
GGAGTTGGACAGGCTTATTGGGGGATGGTTTTGGCTCATTGTGGTGTCGCAGCAACAGTGATTGGCATTGCTGTTTCTTC
AGCTTATGGCGTACAAGATGATGTACGTATGTCTCCTGGCAAGCAAGTGAATCTGCTGGATTATCAGATTGGATTCATTA
ATCAGACTCCGTTGAATGGCCCAAATTACAAAGGGACAAGGGCTGAGTTTTCAATACAATATCAGAATAAAACCAGGAAA
ATTTTTCCTGAAAAAAGAGTGTATACCATTGGACAAATGCCAATGACTGAGTCTGCGATTGATGTTACTCCTTTCCGAGA
TATTTACATTGCTTTGGGGGAACCACTGTCTGAGGATGCCTGGTCGGTACGTATTTATTATAAACCGTTGGTCCGCTGGA
TTTGGGCTGGCGGATTTATGATTTTAGCCGGAGGCGTTTTGGCATTAACAGATAGAAGGTATTACAGAAAAAGGCAAGTA
ACGGTAATGTCAGTGCGGGAGATCAAGATATGA

Upstream 100 bases:

>100_bases
CTGATAATCATCATTTTCATGCTACACAAGTTTTGGCAAAACACGATGCCAATTATATGCCACCTCAAGTAAAGTCTGCT
TTAGCTGATAAGGTGAAACA

Downstream 100 bases:

>100_bases
AAAAAATAGGATGGCGTGTTATTCCTGTCGCTATTTTTTGTCTTTTATGTTTTTTCCTCTGGCGAGGTTTATCTTTGGAT
CCTCATCATTTGCCTTCAGC

Product: cytochrome C-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 650; Mature: 650

Protein sequence:

>650_residues
MIAELGLFFLVLALVASLMLALIPLAGLQFNRKDWIDSSRNYVVLQFLFVACAYLCLTACFLMDDFSVIYVLNNSSLLLP
WFYKFCAVWGGHEGSMLLWVAILSFWMILVCFFSSSLDTEMRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRD
LNPLLQDPGFLFHPPMLYMGYVGFCVAFAFAIAALWAGKVETSWSKWTRPWTLAAWCCLTAGITLGSWWAYRELGWGGWW
FWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMLLAIAAFSLSLIGTFLVRSGVLTSVHAFAVDPQRGLYILGFLL
FVIGGSLTLFLFRAQTLQVNKHPGLLSRESALLLNNVFLVVIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFVPLMI
PLLLLMGLGVRLKWQNDCWRDVFRKLNRIFLLSLILPVILLFCTSTEIHLTALLGLILAFWVLLSTANAAYHKVRDRGVA
GVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVNLLDYQIGFINQTPLNGPNYKGTRAEFSIQYQNKTRK
IFPEKRVYTIGQMPMTESAIDVTPFRDIYIALGEPLSEDAWSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQV
TVMSVREIKI

Sequences:

>Translated_650_residues
MIAELGLFFLVLALVASLMLALIPLAGLQFNRKDWIDSSRNYVVLQFLFVACAYLCLTACFLMDDFSVIYVLNNSSLLLP
WFYKFCAVWGGHEGSMLLWVAILSFWMILVCFFSSSLDTEMRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRD
LNPLLQDPGFLFHPPMLYMGYVGFCVAFAFAIAALWAGKVETSWSKWTRPWTLAAWCCLTAGITLGSWWAYRELGWGGWW
FWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMLLAIAAFSLSLIGTFLVRSGVLTSVHAFAVDPQRGLYILGFLL
FVIGGSLTLFLFRAQTLQVNKHPGLLSRESALLLNNVFLVVIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFVPLMI
PLLLLMGLGVRLKWQNDCWRDVFRKLNRIFLLSLILPVILLFCTSTEIHLTALLGLILAFWVLLSTANAAYHKVRDRGVA
GVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVNLLDYQIGFINQTPLNGPNYKGTRAEFSIQYQNKTRK
IFPEKRVYTIGQMPMTESAIDVTPFRDIYIALGEPLSEDAWSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQV
TVMSVREIKI
>Mature_650_residues
MIAELGLFFLVLALVASLMLALIPLAGLQFNRKDWIDSSRNYVVLQFLFVACAYLCLTACFLMDDFSVIYVLNNSSLLLP
WFYKFCAVWGGHEGSMLLWVAILSFWMILVCFFSSSLDTEMRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRD
LNPLLQDPGFLFHPPMLYMGYVGFCVAFAFAIAALWAGKVETSWSKWTRPWTLAAWCCLTAGITLGSWWAYRELGWGGWW
FWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMLLAIAAFSLSLIGTFLVRSGVLTSVHAFAVDPQRGLYILGFLL
FVIGGSLTLFLFRAQTLQVNKHPGLLSRESALLLNNVFLVVIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFVPLMI
PLLLLMGLGVRLKWQNDCWRDVFRKLNRIFLLSLILPVILLFCTSTEIHLTALLGLILAFWVLLSTANAAYHKVRDRGVA
GVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVNLLDYQIGFINQTPLNGPNYKGTRAEFSIQYQNKTRK
IFPEKRVYTIGQMPMTESAIDVTPFRDIYIALGEPLSEDAWSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQV
TVMSVREIKI

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=640, Percent_Identity=51.875, Blast_Score=610, Evalue=1e-175,
Organism=Escherichia coli, GI1790511, Length=573, Percent_Identity=38.2198952879581, Blast_Score=340, Evalue=2e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 73179; Mature: 73179

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAELGLFFLVLALVASLMLALIPLAGLQFNRKDWIDSSRNYVVLQFLFVACAYLCLTAC
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH
FLMDDFSVIYVLNNSSLLLPWFYKFCAVWGGHEGSMLLWVAILSFWMILVCFFSSSLDTE
HHHCCCEEEEEECCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
MRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRDLNPLLQDPGFLFHPPMLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHCCCCCEECCHHHHHH
YVGFCVAFAFAIAALWAGKVETSWSKWTRPWTLAAWCCLTAGITLGSWWAYRELGWGGWW
HHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCEE
FWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMLLAIAAFSLSLIGTFLVRSGVLT
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
SVHAFAVDPQRGLYILGFLLFVIGGSLTLFLFRAQTLQVNKHPGLLSRESALLLNNVFLV
HHHHEEECCCCCHHHHHHHHHHHCCHHHHHHEEHHHEEECCCCCCCCCCHHHHHHHHHHH
VIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFVPLMIPLLLLMGLGVRLKWQNDCWR
HHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHH
DVFRKLNRIFLLSLILPVILLFCTSTEIHLTALLGLILAFWVLLSTANAAYHKVRDRGVA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
GVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVNLLDYQIGFINQTPLNG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECEECCCCCC
PNYKGTRAEFSIQYQNKTRKIFPEKRVYTIGQMPMTESAIDVTPFRDIYIALGEPLSEDA
CCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHEEECCCCCCCC
WSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQVTVMSVREIKI
EEEEEEHHHHHHHHHHCCHHHHHCCHHEEHHHHHHHHHCEEEEEHEECCC
>Mature Secondary Structure
MIAELGLFFLVLALVASLMLALIPLAGLQFNRKDWIDSSRNYVVLQFLFVACAYLCLTAC
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH
FLMDDFSVIYVLNNSSLLLPWFYKFCAVWGGHEGSMLLWVAILSFWMILVCFFSSSLDTE
HHHCCCEEEEEECCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
MRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRDLNPLLQDPGFLFHPPMLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHCCCCCEECCHHHHHH
YVGFCVAFAFAIAALWAGKVETSWSKWTRPWTLAAWCCLTAGITLGSWWAYRELGWGGWW
HHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCEE
FWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMLLAIAAFSLSLIGTFLVRSGVLT
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
SVHAFAVDPQRGLYILGFLLFVIGGSLTLFLFRAQTLQVNKHPGLLSRESALLLNNVFLV
HHHHEEECCCCCHHHHHHHHHHHCCHHHHHHEEHHHEEECCCCCCCCCCHHHHHHHHHHH
VIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFVPLMIPLLLLMGLGVRLKWQNDCWR
HHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHH
DVFRKLNRIFLLSLILPVILLFCTSTEIHLTALLGLILAFWVLLSTANAAYHKVRDRGVA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
GVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVNLLDYQIGFINQTPLNG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECEECCCCCC
PNYKGTRAEFSIQYQNKTRKIFPEKRVYTIGQMPMTESAIDVTPFRDIYIALGEPLSEDA
CCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHEEECCCCCCCC
WSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQVTVMSVREIKI
EEEEEEHHHHHHHHHHCCHHHHHCCHHEEHHHHHHHHHCEEEEEHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]