Click here to switch to the map view.

The map label for this gene is yibD [C]

Identifier: 54296842

GI number: 54296842

Start: 992707

End: 993486

Strand: Direct

Name: yibD [C]

Synonym: lpp0883

Alternate gene names: 54296842

Gene position: 992707-993486 (Clockwise)

Preceding gene: 54296841

Following gene: 54296843

Centisome position: 28.33

GC content: 35.51

Gene sequence:

>780_bases
ATGTTATCCGTAATAATTATCACAAAAAATGAAGAAGCCAACATAAGGCGGTGCTTGGAATCCGTTCATTTTGCAGATGA
AATAATTGTATTGGACTCTGGCAGCACAGATAATACATTAGCTATAGCCAGGGAGTATACGGATAAAGTATTTTCAACAG
ATTGGCAAGGCTATGGTATCCAAAAGGATAGGGCCTTACAGAAGGCTCAAGGGGATTGGGTTTTAAATCTTGATGCTGAT
GAATCAGTAAGCTCGGAATTACGACAGGAAATACTACAGGCCATTTCATCGGATACAGCAGATGCATTTCGTATTCCTAT
ACAAATGATTTTTTATAATCAAGTTTTAAAATATTCAGGAAGTCCTAAAAGGCATATACGATTATTTAAAAGAGAGAATG
CTTCTTATAGCAAAGACATCGTTCATGAAAAAGTATTGATTCCTGTTAATGCGAGAGTGGGAAAACTAAAAAAACCGATT
TGGCATCATTCTTTTAGCGATGTACATCATGTACTATACAAACTTAACAAATATTCTTCTTATAGTGCGAAAATCCGTAT
AGAATCCAATGAAAAAGTTGGATTAGTAAAAACTTTTTTTAGCGCCCTATGGATGTTTGTCAGATGCCTTTTTTTACAGA
AGGGATTTTTAGACGGCAGGGCAGGTTTTTTGTTTGCAGTATTTGGGGCGCAAGGCGCTTTTTATCGCGGGGTCAAACAA
ATATATAAAGACAGGGATATCAATAAATTACCCAGTGTAAATCATATAAAAGAGGAATAA

Upstream 100 bases:

>100_bases
CGGTCCCAAAAATCGTACCGTACAGAGATTATTCCTTTTTACCTTGTTACAATCCGGCTTAATTATCGATATAATATTTA
TTTTGAATTGATATAAAGTC

Downstream 100 bases:

>100_bases
TCGTGCGATTAACCATAATGGATACCAAGGGTATTTTATTAGCTCCTTTTTTCTTTATTTCATTTATGTTTTTTATTCCG
ATCAGTCCCACGATAAAGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MLSVIIITKNEEANIRRCLESVHFADEIIVLDSGSTDNTLAIAREYTDKVFSTDWQGYGIQKDRALQKAQGDWVLNLDAD
ESVSSELRQEILQAISSDTADAFRIPIQMIFYNQVLKYSGSPKRHIRLFKRENASYSKDIVHEKVLIPVNARVGKLKKPI
WHHSFSDVHHVLYKLNKYSSYSAKIRIESNEKVGLVKTFFSALWMFVRCLFLQKGFLDGRAGFLFAVFGAQGAFYRGVKQ
IYKDRDINKLPSVNHIKEE

Sequences:

>Translated_259_residues
MLSVIIITKNEEANIRRCLESVHFADEIIVLDSGSTDNTLAIAREYTDKVFSTDWQGYGIQKDRALQKAQGDWVLNLDAD
ESVSSELRQEILQAISSDTADAFRIPIQMIFYNQVLKYSGSPKRHIRLFKRENASYSKDIVHEKVLIPVNARVGKLKKPI
WHHSFSDVHHVLYKLNKYSSYSAKIRIESNEKVGLVKTFFSALWMFVRCLFLQKGFLDGRAGFLFAVFGAQGAFYRGVKQ
IYKDRDINKLPSVNHIKEE
>Mature_259_residues
MLSVIIITKNEEANIRRCLESVHFADEIIVLDSGSTDNTLAIAREYTDKVFSTDWQGYGIQKDRALQKAQGDWVLNLDAD
ESVSSELRQEILQAISSDTADAFRIPIQMIFYNQVLKYSGSPKRHIRLFKRENASYSKDIVHEKVLIPVNARVGKLKKPI
WHHSFSDVHHVLYKLNKYSSYSAKIRIESNEKVGLVKTFFSALWMFVRCLFLQKGFLDGRAGFLFAVFGAQGAFYRGVKQ
IYKDRDINKLPSVNHIKEE

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 29768; Mature: 29768

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVIIITKNEEANIRRCLESVHFADEIIVLDSGSTDNTLAIAREYTDKVFSTDWQGYGI
CEEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEHHHHHHHHHHCCCCCCCCC
QKDRALQKAQGDWVLNLDADESVSSELRQEILQAISSDTADAFRIPIQMIFYNQVLKYSG
CHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
SPKRHIRLFKRENASYSKDIVHEKVLIPVNARVGKLKKPIWHHSFSDVHHVLYKLNKYSS
CCHHHHHHHHHCCCCHHHHHHHCEEEEECCCCHHHHCCCHHCCCHHHHHHHHHHHHCCCC
YSAKIRIESNEKVGLVKTFFSALWMFVRCLFLQKGFLDGRAGFLFAVFGAQGAFYRGVKQ
CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHH
IYKDRDINKLPSVNHIKEE
HHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLSVIIITKNEEANIRRCLESVHFADEIIVLDSGSTDNTLAIAREYTDKVFSTDWQGYGI
CEEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEHHHHHHHHHHCCCCCCCCC
QKDRALQKAQGDWVLNLDADESVSSELRQEILQAISSDTADAFRIPIQMIFYNQVLKYSG
CHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
SPKRHIRLFKRENASYSKDIVHEKVLIPVNARVGKLKKPIWHHSFSDVHHVLYKLNKYSS
CCHHHHHHHHHCCCCHHHHHHHCEEEEECCCCHHHHCCCHHCCCHHHHHHHHHHHHCCCC
YSAKIRIESNEKVGLVKTFFSALWMFVRCLFLQKGFLDGRAGFLFAVFGAQGAFYRGVKQ
CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHH
IYKDRDINKLPSVNHIKEE
HHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]