Click here to switch to the map view.

The map label for this gene is 54295744

Identifier: 54295744

GI number: 54295744

Start: 3233251

End: 3233541

Strand: Reverse

Name: 54295744

Synonym: lpl2833

Alternate gene names: NA

Gene position: 3233541-3233251 (Counterclockwise)

Preceding gene: 54295745

Following gene: 54295742

Centisome position: 96.65

GC content: 35.74

Gene sequence:

>291_bases
ATGGATAAAAAATTATTTGAACGATTATACGAAAGTATGACTCAGATGAACGAAATTATTGATGGTGAGCGTGTTCCTTC
ACGTGAGTTCGTAGTGGATGCTGTTCATATAAAAGAAATTAGAAAAAAAACAGGCCTAACCCAAGAAAAATTTTGTCATT
TAATTGATGTAAATATTGGAACATTAAGAAATTGGGAGCAGGGGAGAAGAGAGCCAACAGGTCCTGCAAAAGCTCTTCTT
CGCGCAATAAATAAAGATCCTGAACATGTATTAGCAGCATTAGCTGGTTGA

Upstream 100 bases:

>100_bases
TCACAAATAAGACTCTTACTTATTTATAAAAAAGTATTCAAGATGATCTGACTACAGATCAAAAGAAAATGTTACGGCAA
TTAAATGAACGGTGGTAATC

Downstream 100 bases:

>100_bases
TACTTGATGTCTTAACTTTCTATAAAAAGTGCAGACAGTGTCGGCACAATTCAAAGTTTCTCTAAAGGAGCTTTTAACTC
AAAATATAGAAAACGAGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Helix-Turn-Helix XRE Family Protein; MerR Family Regulatory Protein; Cro/CI Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Cro/CI Family Phage Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcriptional Regulator Protein; Transcriptional Repressor

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MDKKLFERLYESMTQMNEIIDGERVPSREFVVDAVHIKEIRKKTGLTQEKFCHLIDVNIGTLRNWEQGRREPTGPAKALL
RAINKDPEHVLAALAG

Sequences:

>Translated_96_residues
MDKKLFERLYESMTQMNEIIDGERVPSREFVVDAVHIKEIRKKTGLTQEKFCHLIDVNIGTLRNWEQGRREPTGPAKALL
RAINKDPEHVLAALAG
>Mature_96_residues
MDKKLFERLYESMTQMNEIIDGERVPSREFVVDAVHIKEIRKKTGLTQEKFCHLIDVNIGTLRNWEQGRREPTGPAKALL
RAINKDPEHVLAALAG

Specific function: Unknown

COG id: COG2944

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11013; Mature: 11013

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKLFERLYESMTQMNEIIDGERVPSREFVVDAVHIKEIRKKTGLTQEKFCHLIDVNIG
CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCH
TLRNWEQGRREPTGPAKALLRAINKDPEHVLAALAG
HCCCCHHCCCCCCCHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MDKKLFERLYESMTQMNEIIDGERVPSREFVVDAVHIKEIRKKTGLTQEKFCHLIDVNIG
CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCH
TLRNWEQGRREPTGPAKALLRAINKDPEHVLAALAG
HCCCCHHCCCCCCCHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA