Click here to switch to the map view.

The map label for this gene is 54295684

Identifier: 54295684

GI number: 54295684

Start: 3171195

End: 3171638

Strand: Reverse

Name: 54295684

Synonym: lpl2772

Alternate gene names: NA

Gene position: 3171638-3171195 (Counterclockwise)

Preceding gene: 54295686

Following gene: 54295683

Centisome position: 94.8

GC content: 38.29

Gene sequence:

>444_bases
ATGGACAGGAGGTATTTGTCACCTTTGGAGCTGCTAGGCATTGCTACGCAACACGCCTATACAGCAGATTATATGTTGCA
GCAAATTGCCAATGGAATGTATCGAGGTGGGGAAACTATCGCAGTTTTTTCTCCAATCACTTCACTCATGTACGTTGCTT
TTCAGCTAACCTTCAAAGCTTATTGTTTGCATGATCACAGACCAATAAAGGAATATAAAAATCTGATGGAACTGGTTGAG
TTGAATAGTCATCTTGGTTTATCCAGCAATGATATTTTTCTTTTAAAAACTTTATCAAGACAGCAAGTGTTTAATAAAGG
AGTAGATTACGACCTTTGGGAAAATCAGCAACAATTGCATGTTTTTTGTGAGGAAATTATTTCATTGTATGAGAGAGTGC
AGTCGATGATGCCTCTGGAGTTGCAAAGTGACTATCAGGAGTGA

Upstream 100 bases:

>100_bases
TGTTAATAAAAGTGTGCATCAATGGAATTAAAGGATATAATCGCTTTTTATTTTAACATGATTCATCATGAAGAACCAGA
AAAAAGGGAGAGGCTTCCAT

Downstream 100 bases:

>100_bases
CCGGCTGAATTAGCGCCCTGTTAAGTGTCTTTGCTTAAGTTTTCTTAGGTTGTGCATGGTCCAGGATGCATTAATCAGAT
ATCAAAATGATTTATTTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MDRRYLSPLELLGIATQHAYTADYMLQQIANGMYRGGETIAVFSPITSLMYVAFQLTFKAYCLHDHRPIKEYKNLMELVE
LNSHLGLSSNDIFLLKTLSRQQVFNKGVDYDLWENQQQLHVFCEEIISLYERVQSMMPLELQSDYQE

Sequences:

>Translated_147_residues
MDRRYLSPLELLGIATQHAYTADYMLQQIANGMYRGGETIAVFSPITSLMYVAFQLTFKAYCLHDHRPIKEYKNLMELVE
LNSHLGLSSNDIFLLKTLSRQQVFNKGVDYDLWENQQQLHVFCEEIISLYERVQSMMPLELQSDYQE
>Mature_147_residues
MDRRYLSPLELLGIATQHAYTADYMLQQIANGMYRGGETIAVFSPITSLMYVAFQLTFKAYCLHDHRPIKEYKNLMELVE
LNSHLGLSSNDIFLLKTLSRQQVFNKGVDYDLWENQQQLHVFCEEIISLYERVQSMMPLELQSDYQE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17237; Mature: 17237

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRRYLSPLELLGIATQHAYTADYMLQQIANGMYRGGETIAVFSPITSLMYVAFQLTFKA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHH
YCLHDHRPIKEYKNLMELVELNSHLGLSSNDIFLLKTLSRQQVFNKGVDYDLWENQQQLH
HHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCCCCHHCCHHHHH
VFCEEIISLYERVQSMMPLELQSDYQE
HHHHHHHHHHHHHHHHCCCHHHCCCCC
>Mature Secondary Structure
MDRRYLSPLELLGIATQHAYTADYMLQQIANGMYRGGETIAVFSPITSLMYVAFQLTFKA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHH
YCLHDHRPIKEYKNLMELVELNSHLGLSSNDIFLLKTLSRQQVFNKGVDYDLWENQQQLH
HHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCCCCHHCCHHHHH
VFCEEIISLYERVQSMMPLELQSDYQE
HHHHHHHHHHHHHHHHCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA