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The map label for this gene is cspA [H]

Identifier: 54295674

GI number: 54295674

Start: 3160391

End: 3160606

Strand: Reverse

Name: cspA [H]

Synonym: lpl2762

Alternate gene names: 54295674

Gene position: 3160606-3160391 (Counterclockwise)

Preceding gene: 54295675

Following gene: 54295672

Centisome position: 94.47

GC content: 41.67

Gene sequence:

>216_bases
ATGTCTGTGAAAGAAACTGGCCACGTTAAGTGGTTTAATGATGATAAAGGTTATGGCTTCATTAGTCGTGATAATGGTCA
AGACGATGTATTTGTACACTTCCGCTCTATCGTTAGCAGTGCTGGGCGCAAAACTTTGCTAGAGGGACAACGAGTGGAAT
TTCTTGTTACTAAGGGCGCGAAAGGTTTGCAAGCAGAAGAAGTAACTGCTATATAA

Upstream 100 bases:

>100_bases
TATATTTCCCTTGGTCGTGAATTTCTCTCGATGATTACATTGTATTTTTTCTCTTATCGCTCATTACAAGTGTTTGTTTA
ATTTTATTTGGAACTTTGAA

Downstream 100 bases:

>100_bases
TCCCGTATTCACTGAATTACCTTCCTCTTTGTCTAAAAAAACGAAGAGGAAGGTGGTTTTTTAATGCCAATAAATTGCAT
TAATTTTTTCAATTATTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 71; Mature: 70

Protein sequence:

>71_residues
MSVKETGHVKWFNDDKGYGFISRDNGQDDVFVHFRSIVSSAGRKTLLEGQRVEFLVTKGAKGLQAEEVTAI

Sequences:

>Translated_71_residues
MSVKETGHVKWFNDDKGYGFISRDNGQDDVFVHFRSIVSSAGRKTLLEGQRVEFLVTKGAKGLQAEEVTAI
>Mature_70_residues
SVKETGHVKWFNDDKGYGFISRDNGQDDVFVHFRSIVSSAGRKTLLEGQRVEFLVTKGAKGLQAEEVTAI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=58.4615384615385, Blast_Score=79, Evalue=6e-17,
Organism=Escherichia coli, GI1789979, Length=71, Percent_Identity=56.3380281690141, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI2367114, Length=71, Percent_Identity=53.5211267605634, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=57.3529411764706, Blast_Score=73, Evalue=4e-15,
Organism=Escherichia coli, GI1788126, Length=68, Percent_Identity=55.8823529411765, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1787834, Length=71, Percent_Identity=53.5211267605634, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=43.2835820895522, Blast_Score=60, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7902; Mature: 7771

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKETGHVKWFNDDKGYGFISRDNGQDDVFVHFRSIVSSAGRKTLLEGQRVEFLVTKGA
CCCCCCCCEEEEECCCCCEEEECCCCCCCEEHHHHHHHHCCCCCCCCCCCEEEEEEECCC
KGLQAEEVTAI
CCCCCCCEECC
>Mature Secondary Structure 
SVKETGHVKWFNDDKGYGFISRDNGQDDVFVHFRSIVSSAGRKTLLEGQRVEFLVTKGA
CCCCCCCEEEEECCCCCEEEECCCCCCCEEHHHHHHHHCCCCCCCCCCCEEEEEEECCC
KGLQAEEVTAI
CCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]