Click here to switch to the map view.

The map label for this gene is 54295568

Identifier: 54295568

GI number: 54295568

Start: 3025561

End: 3025989

Strand: Reverse

Name: 54295568

Synonym: lpl2655

Alternate gene names: NA

Gene position: 3025989-3025561 (Counterclockwise)

Preceding gene: 54295570

Following gene: 54295567

Centisome position: 90.44

GC content: 39.86

Gene sequence:

>429_bases
ATGAGGTTGAATATTGCGCTGATCTTGTCTTTTTTTTCAATCATGCTTTTTGCAATGGACGAGGTGGATGAGCAACAAAT
TTTACAAAGAATTCAACCGGTTGGGAAAGTTCGAGTTCAAGAGGAACAGGGGAATAATATAGAAGCTGAAGCGACTAAAA
CGACTGTTGTTGATTCCAAGAGCAAAAAAGAACCAGGCCAAGATATATATGATAAATATTGCTCCGTATGCCATAGGGAT
GGATTGGCAGGGGCGCCTAAATTTCAATCGGAGGCCGATTGGAAACCTCGATTGGCAAGTAAAAAAATAGATGATTTACT
CGCTTCTGCAATCAAGGGGTTAAATGCTATGCCAGCAAAAGGTACTTGTATGGACTGTTCTGATGCTGAATTAAAAGCCG
CAATACAATATATGTTGCCGAAATCATGA

Upstream 100 bases:

>100_bases
TTAATGATTTTATAAATCGTTGGGCCTATTGAAATCTTTCTGGAAAAAAAAGTCACTTGTCGGTATGATTTTTAAATTAA
CTATTAGAGGACGGATAAAT

Downstream 100 bases:

>100_bases
AAAAGCTTACTTACAGAAAAATACAATCTTTTCAGGCAATTATTACAGTATTGGTAATCTTCGCTTCGTTTTACCTTGAA
TATGCTGCTGGGCTACAACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MRLNIALILSFFSIMLFAMDEVDEQQILQRIQPVGKVRVQEEQGNNIEAEATKTTVVDSKSKKEPGQDIYDKYCSVCHRD
GLAGAPKFQSEADWKPRLASKKIDDLLASAIKGLNAMPAKGTCMDCSDAELKAAIQYMLPKS

Sequences:

>Translated_142_residues
MRLNIALILSFFSIMLFAMDEVDEQQILQRIQPVGKVRVQEEQGNNIEAEATKTTVVDSKSKKEPGQDIYDKYCSVCHRD
GLAGAPKFQSEADWKPRLASKKIDDLLASAIKGLNAMPAKGTCMDCSDAELKAAIQYMLPKS
>Mature_142_residues
MRLNIALILSFFSIMLFAMDEVDEQQILQRIQPVGKVRVQEEQGNNIEAEATKTTVVDSKSKKEPGQDIYDKYCSVCHRD
GLAGAPKFQSEADWKPRLASKKIDDLLASAIKGLNAMPAKGTCMDCSDAELKAAIQYMLPKS

Specific function: It is unreactive with cytochrome c reductase or oxidase [H]

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR002323 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15739; Mature: 15739

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLNIALILSFFSIMLFAMDEVDEQQILQRIQPVGKVRVQEEQGNNIEAEATKTTVVDSK
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHEEEECCCCCCEECCHHHHHHCCCC
SKKEPGQDIYDKYCSVCHRDGLAGAPKFQSEADWKPRLASKKIDDLLASAIKGLNAMPAK
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
GTCMDCSDAELKAAIQYMLPKS
CCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLNIALILSFFSIMLFAMDEVDEQQILQRIQPVGKVRVQEEQGNNIEAEATKTTVVDSK
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHEEEECCCCCCEECCHHHHHHCCCC
SKKEPGQDIYDKYCSVCHRDGLAGAPKFQSEADWKPRLASKKIDDLLASAIKGLNAMPAK
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
GTCMDCSDAELKAAIQYMLPKS
CCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2993632 [H]