| Definition | Legionella pneumophila str. Lens, complete genome. |
|---|---|
| Accession | NC_006369 |
| Length | 3,345,687 |
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The map label for this gene is hepA [H]
Identifier: 54295138
GI number: 54295138
Start: 2533850
End: 2536726
Strand: Direct
Name: hepA [H]
Synonym: lpl2218
Alternate gene names: 54295138
Gene position: 2533850-2536726 (Clockwise)
Preceding gene: 54295136
Following gene: 54295144
Centisome position: 75.73
GC content: 39.42
Gene sequence:
>2877_bases ATGACATTTCGCATTGGTCAACGCTGGATAAGTAATACTGAATCACAACTGGGTTTAGGCATTATTACTGAAGTAGATGG CAGACAAGTTTCTATCAGTTTCCCGGCTGGTGGGGAGGATAGAATTTATGCTATAGATAATGCGCCATTAAGCCGCATAG TCTATAAAACAGGTGAAGAAATACTTACCAATGATCAGCAAAGAATAAAAGTAACTTCCATCCAGGAACAAGATGGTGTT TTACTGTATACAGGAAATGACGACTTGGGAAATGTGGCTCAAGTTAGTGAGCTGGCACTTAATTGTTTTATCAAACTTAA CTCCCCTCAACAAAGGCTCTTCAGCGGATTATTGGACAAACTAAATGCTTTTAAACTCAGAATTAAAACATTAGAGCATT TAGGCCGATTACAACAGTCAAAAGCAAGAGGCCTATTAGGTTCACGAACTAACCACCTTATCCACCAAATCTATATTGCT TATGAAGTTGCCCAAAGATTTGCTCCCAGAGTGATGCTTGCCGACGAGGTTGGATTGGGAAAAACCATTGAAGCGGGAAT GATTTTGCATTATCAACTGCATACTGGCCGTGCCTCACGTGTATTAATCATTGTTCCAAATTCATTAATTCACCAATGGT TTGTCGAAATGTTAAGGAGATTCAATCTGCATTTCTCTATCATTGGTCCAAATCAATACGATGCCATGCCATCCACACTT GATGAGTTGGAAGATAACGACAATCCAATCGAGCCAGCATTAGAAGATGGTAATCTGTTTGAAGGTGAACAACTGGTATT AACCAGCCTGGATTTCCTTATGGAAAATGAAACAGCGCGTCAACAGGCATTAGCTGCGCAATGGGATCTTCTGGTAGTAG ATGAAGCGCATCATCTTTATTGGTCGGAAGACTCACAAAGTCCTGAATACACGTTCATTGAAAAATTATCCGCTCAAAGC ACAGGCCTGCTTCTTCTTACCGCAACTCCTGAACAAGTTGGAATGAAGAGTCATTTCGCTCGTCTTCGTCTACTTGATCC AGCACGCTTTTATGATTTTTCAGCCTTTGTAAATGAAGAAAAGCAATACCATGAAATTAATAAAATAGTTCAGGATCTCA TGGATTATAAGGAAAAAAATGGCGTAGATGAGTTAAATCCCCAACTCCACTCTCATTTAAAACAACTTTTGGGTAAAGAA GCTCCTGCTGGCATTAATGCAACGATCAAAGATTTGCTTGATAGATTCGGCACAGGTCGAGTACTTTTTCGCAATACTCG TGCAGCGATTAAAGGATTTCCCGAAAGAAGAATACACCCTGTCGCATTAACATGCCCAGCGCTTTATTCCGAGATAATCA GAGAATCCAACTTAATCCATCTTTACCCTGAAACTTTGCTTAATAATGACTCCTGGATAGACCATGACCCCCGAGTGCAA TGGCTTGTTAACAAAATTAATGAATTACGTCCGGAAAAAATTCTGGTAATTTGCGCAAAGGCAAAAACAGCCATTAGTCT GGAACAGTATTTAAAATTAAAAACAGGCATTCGAAGTACTTTATTTCATGAAGGACTTACCATTATAGAGCGTGACAGGG CCGCCGCTTATTTTGCAGAACAAGAAAATGGTGCACAGGTTCTTGTTTGTTCCGAGATAGGAAGTGAGGGAAGAAACTTC CAGTTTTCCCATCATTTGGTTTTGTTTGATTTGCCATTAAACCCTGACCTTTTAGAGCAACGTATCGGGCGTTTGGATCG TATTGGTCAAAATCATCCCATTGAAATTCATGTACCCTATTTAGCGGGTACCGCGCAGGAAAAGCTATTTCGCTGGTATC ACGAAGGAATCAACATTCTTCAACAAAGCTGCTCTGTTGGCTTTTCAATTTTTGAAGTTTTTGAAAATCGACTGACACCT GTTTTATCCAATCCACTGCAGGATACTAGCGAGCAATCATTAGAGAAGCTTATTGCTGATACTCAATTGCATACTCAGCA TATCAAGGAAGCCCTTAATGCAGGAAGAGATAGATTACTAGAATTAAACTCCTGTAATTACACTATAGGGAAAGAACTCA TTGAAGCGATAGAAGCAGAAGAAAATTGCCTTGAACTTGAAAATTACATGTCGCAAGTATATCAGGAGTATGGAATTGAT CAGGAATATCATTCCGAGAATGCCGAAATATTGCGCCCTGGTAACCACATGAAAACCGCTCATTTTCCTGGGCTAAAAGA AGATGGCATGACCGTCACTTATTCTCGCTCTAAAGCCCTTGTTCGGGAAGACATGGAATTTTTAAGTTGGGAACACCCCA TGGTTTATGACACTATGGAAATGATCCTGGAGTCAGAACTTGGCAACGCCACAGTGACTACTATTTCAATCAAAAGCATA AAACCGGGTACCCTCTTCCTGGAAACTTTTTATACCATTAATTCTTCCGCCCCTAAATACTTACAACTTGACCGATTTAT TCCTTCATTGCCTATTCGAATTTTGATGGATACTACCGGCAAAAATTTATCAGGCATTTTAAGTTATGAGCAGCTTAATA ATCTGTGCCAACCACTTAAACGTCATCTGGGTTACCCTGTTATTAAACAAGTTCGTGAAGAGATTGAATCCATTCTGCAA CGAACCAACAAAATCGCAGAAGATCAGATGAAATTATTTATTGAAGAAGCAAAATCAATGATGGAGCTAACGACTTCTCA AGAAGTTAATCGACTGGAATCCTTGCAAAAAATTAATCCCGCCATTCGGGATGAAGAAATTGAGTTCTTTAAAAAGAAAA TTTCAGAGAGTAATTACTTCATTAATAGCTCCACTTTAAAGCTTCAAGCGATTCGGGTTGTAATCAATGTCAGTTAG
Upstream 100 bases:
>100_bases CGATGCTTAGGCATCTCCTCAGCCCGAACGAACCCTGCATATCGACTACTTCTTATATAATCCTTATCCATAATTCATGT TAATGAGGAAGTTTCTCTAA
Downstream 100 bases:
>100_bases TTAATCATCCCTTGACAAATTGGCACGATAATAAATGAAATTGCTTGTCTTACAGGCTGGATGCTGATTTCACAAAATCA ACAACTATTAGATTATTAAC
Product: ATP-dependent helicase HepA
Products: NA
Alternate protein names: ATP-dependent helicase hepA [H]
Number of amino acids: Translated: 958; Mature: 957
Protein sequence:
>958_residues MTFRIGQRWISNTESQLGLGIITEVDGRQVSISFPAGGEDRIYAIDNAPLSRIVYKTGEEILTNDQQRIKVTSIQEQDGV LLYTGNDDLGNVAQVSELALNCFIKLNSPQQRLFSGLLDKLNAFKLRIKTLEHLGRLQQSKARGLLGSRTNHLIHQIYIA YEVAQRFAPRVMLADEVGLGKTIEAGMILHYQLHTGRASRVLIIVPNSLIHQWFVEMLRRFNLHFSIIGPNQYDAMPSTL DELEDNDNPIEPALEDGNLFEGEQLVLTSLDFLMENETARQQALAAQWDLLVVDEAHHLYWSEDSQSPEYTFIEKLSAQS TGLLLLTATPEQVGMKSHFARLRLLDPARFYDFSAFVNEEKQYHEINKIVQDLMDYKEKNGVDELNPQLHSHLKQLLGKE APAGINATIKDLLDRFGTGRVLFRNTRAAIKGFPERRIHPVALTCPALYSEIIRESNLIHLYPETLLNNDSWIDHDPRVQ WLVNKINELRPEKILVICAKAKTAISLEQYLKLKTGIRSTLFHEGLTIIERDRAAAYFAEQENGAQVLVCSEIGSEGRNF QFSHHLVLFDLPLNPDLLEQRIGRLDRIGQNHPIEIHVPYLAGTAQEKLFRWYHEGINILQQSCSVGFSIFEVFENRLTP VLSNPLQDTSEQSLEKLIADTQLHTQHIKEALNAGRDRLLELNSCNYTIGKELIEAIEAEENCLELENYMSQVYQEYGID QEYHSENAEILRPGNHMKTAHFPGLKEDGMTVTYSRSKALVREDMEFLSWEHPMVYDTMEMILESELGNATVTTISIKSI KPGTLFLETFYTINSSAPKYLQLDRFIPSLPIRILMDTTGKNLSGILSYEQLNNLCQPLKRHLGYPVIKQVREEIESILQ RTNKIAEDQMKLFIEEAKSMMELTTSQEVNRLESLQKINPAIRDEEIEFFKKKISESNYFINSSTLKLQAIRVVINVS
Sequences:
>Translated_958_residues MTFRIGQRWISNTESQLGLGIITEVDGRQVSISFPAGGEDRIYAIDNAPLSRIVYKTGEEILTNDQQRIKVTSIQEQDGV LLYTGNDDLGNVAQVSELALNCFIKLNSPQQRLFSGLLDKLNAFKLRIKTLEHLGRLQQSKARGLLGSRTNHLIHQIYIA YEVAQRFAPRVMLADEVGLGKTIEAGMILHYQLHTGRASRVLIIVPNSLIHQWFVEMLRRFNLHFSIIGPNQYDAMPSTL DELEDNDNPIEPALEDGNLFEGEQLVLTSLDFLMENETARQQALAAQWDLLVVDEAHHLYWSEDSQSPEYTFIEKLSAQS TGLLLLTATPEQVGMKSHFARLRLLDPARFYDFSAFVNEEKQYHEINKIVQDLMDYKEKNGVDELNPQLHSHLKQLLGKE APAGINATIKDLLDRFGTGRVLFRNTRAAIKGFPERRIHPVALTCPALYSEIIRESNLIHLYPETLLNNDSWIDHDPRVQ WLVNKINELRPEKILVICAKAKTAISLEQYLKLKTGIRSTLFHEGLTIIERDRAAAYFAEQENGAQVLVCSEIGSEGRNF QFSHHLVLFDLPLNPDLLEQRIGRLDRIGQNHPIEIHVPYLAGTAQEKLFRWYHEGINILQQSCSVGFSIFEVFENRLTP VLSNPLQDTSEQSLEKLIADTQLHTQHIKEALNAGRDRLLELNSCNYTIGKELIEAIEAEENCLELENYMSQVYQEYGID QEYHSENAEILRPGNHMKTAHFPGLKEDGMTVTYSRSKALVREDMEFLSWEHPMVYDTMEMILESELGNATVTTISIKSI KPGTLFLETFYTINSSAPKYLQLDRFIPSLPIRILMDTTGKNLSGILSYEQLNNLCQPLKRHLGYPVIKQVREEIESILQ RTNKIAEDQMKLFIEEAKSMMELTTSQEVNRLESLQKINPAIRDEEIEFFKKKISESNYFINSSTLKLQAIRVVINVS >Mature_957_residues TFRIGQRWISNTESQLGLGIITEVDGRQVSISFPAGGEDRIYAIDNAPLSRIVYKTGEEILTNDQQRIKVTSIQEQDGVL LYTGNDDLGNVAQVSELALNCFIKLNSPQQRLFSGLLDKLNAFKLRIKTLEHLGRLQQSKARGLLGSRTNHLIHQIYIAY EVAQRFAPRVMLADEVGLGKTIEAGMILHYQLHTGRASRVLIIVPNSLIHQWFVEMLRRFNLHFSIIGPNQYDAMPSTLD ELEDNDNPIEPALEDGNLFEGEQLVLTSLDFLMENETARQQALAAQWDLLVVDEAHHLYWSEDSQSPEYTFIEKLSAQST GLLLLTATPEQVGMKSHFARLRLLDPARFYDFSAFVNEEKQYHEINKIVQDLMDYKEKNGVDELNPQLHSHLKQLLGKEA PAGINATIKDLLDRFGTGRVLFRNTRAAIKGFPERRIHPVALTCPALYSEIIRESNLIHLYPETLLNNDSWIDHDPRVQW LVNKINELRPEKILVICAKAKTAISLEQYLKLKTGIRSTLFHEGLTIIERDRAAAYFAEQENGAQVLVCSEIGSEGRNFQ FSHHLVLFDLPLNPDLLEQRIGRLDRIGQNHPIEIHVPYLAGTAQEKLFRWYHEGINILQQSCSVGFSIFEVFENRLTPV LSNPLQDTSEQSLEKLIADTQLHTQHIKEALNAGRDRLLELNSCNYTIGKELIEAIEAEENCLELENYMSQVYQEYGIDQ EYHSENAEILRPGNHMKTAHFPGLKEDGMTVTYSRSKALVREDMEFLSWEHPMVYDTMEMILESELGNATVTTISIKSIK PGTLFLETFYTINSSAPKYLQLDRFIPSLPIRILMDTTGKNLSGILSYEQLNNLCQPLKRHLGYPVIKQVREEIESILQR TNKIAEDQMKLFIEEAKSMMELTTSQEVNRLESLQKINPAIRDEEIEFFKKKISESNYFINSSTLKLQAIRVVINVS
Specific function: Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on
COG id: COG0553
COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1786245, Length=988, Percent_Identity=42.8137651821862, Blast_Score=827, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR022737 - InterPro: IPR000330 [H]
Pfam domain/function: PF00271 Helicase_C; PF12137 RapA_C; PF00176 SNF2_N [H]
EC number: 3.6.1.- [C]
Molecular weight: Translated: 109445; Mature: 109314
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFRIGQRWISNTESQLGLGIITEVDGRQVSISFPAGGEDRIYAIDNAPLSRIVYKTGEE CCCCCCHHHHCCCCHHCCCEEEEECCCCEEEEECCCCCCCCEEEECCCCHHHHHHHCCHH ILTNDQQRIKVTSIQEQDGVLLYTGNDDLGNVAQVSELALNCFIKLNSPQQRLFSGLLDK HHCCCCCEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHEEEEEEECCHHHHHHHHHHHH LNAFKLRIKTLEHLGRLQQSKARGLLGSRTNHLIHQIYIAYEVAQRFAPRVMLADEVGLG HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC KTIEAGMILHYQLHTGRASRVLIIVPNSLIHQWFVEMLRRFNLHFSIIGPNQYDAMPSTL CEECCCEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHH DELEDNDNPIEPALEDGNLFEGEQLVLTSLDFLMENETARQQALAAQWDLLVVDEAHHLY HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEECCCEEE WSEDSQSPEYTFIEKLSAQSTGLLLLTATPEQVGMKSHFARLRLLDPARFYDFSAFVNEE ECCCCCCCCHHHHHHHCCCCCCEEEEEECHHHHCHHHHHHHHEECCCHHHHHHHHHHCCH KQYHEINKIVQDLMDYKEKNGVDELNPQLHSHLKQLLGKEAPAGINATIKDLLDRFGTGR HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCE VLFRNTRAAIKGFPERRIHPVALTCPALYSEIIRESNLIHLYPETLLNNDSWIDHDPRVQ EEEECCHHHHCCCCCCCCCEEEEECHHHHHHHHHCCCEEEECHHHHCCCCCCCCCCCHHH WLVNKINELRPEKILVICAKAKTAISLEQYLKLKTGIRSTLFHEGLTIIERDRAAAYFAE HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHEEEE QENGAQVLVCSEIGSEGRNFQFSHHLVLFDLPLNPDLLEQRIGRLDRIGQNHPIEIHVPY CCCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECC LAGTAQEKLFRWYHEGINILQQSCSVGFSIFEVFENRLTPVLSNPLQDTSEQSLEKLIAD CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHH TQLHTQHIKEALNAGRDRLLELNSCNYTIGKELIEAIEAEENCLELENYMSQVYQEYGID HHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QEYHSENAEILRPGNHMKTAHFPGLKEDGMTVTYSRSKALVREDMEFLSWEHPMVYDTME HHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCHHHHHHH MILESELGNATVTTISIKSIKPGTLFLETFYTINSSAPKYLQLDRFIPSLPIRILMDTTG HHHHHCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCHHHHHHCCCCCCEEEEEECCC KNLSGILSYEQLNNLCQPLKRHLGYPVIKQVREEIESILQRTNKIAEDQMKLFIEEAKSM CCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MELTTSQEVNRLESLQKINPAIRDEEIEFFKKKISESNYFINSSTLKLQAIRVVINVS HHHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHCCCCEEEECCCEEEEEEEEEEECC >Mature Secondary Structure TFRIGQRWISNTESQLGLGIITEVDGRQVSISFPAGGEDRIYAIDNAPLSRIVYKTGEE CCCCCHHHHCCCCHHCCCEEEEECCCCEEEEECCCCCCCCEEEECCCCHHHHHHHCCHH ILTNDQQRIKVTSIQEQDGVLLYTGNDDLGNVAQVSELALNCFIKLNSPQQRLFSGLLDK HHCCCCCEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHEEEEEEECCHHHHHHHHHHHH LNAFKLRIKTLEHLGRLQQSKARGLLGSRTNHLIHQIYIAYEVAQRFAPRVMLADEVGLG HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC KTIEAGMILHYQLHTGRASRVLIIVPNSLIHQWFVEMLRRFNLHFSIIGPNQYDAMPSTL CEECCCEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHH DELEDNDNPIEPALEDGNLFEGEQLVLTSLDFLMENETARQQALAAQWDLLVVDEAHHLY HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEECCCEEE WSEDSQSPEYTFIEKLSAQSTGLLLLTATPEQVGMKSHFARLRLLDPARFYDFSAFVNEE ECCCCCCCCHHHHHHHCCCCCCEEEEEECHHHHCHHHHHHHHEECCCHHHHHHHHHHCCH KQYHEINKIVQDLMDYKEKNGVDELNPQLHSHLKQLLGKEAPAGINATIKDLLDRFGTGR HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCE VLFRNTRAAIKGFPERRIHPVALTCPALYSEIIRESNLIHLYPETLLNNDSWIDHDPRVQ EEEECCHHHHCCCCCCCCCEEEEECHHHHHHHHHCCCEEEECHHHHCCCCCCCCCCCHHH WLVNKINELRPEKILVICAKAKTAISLEQYLKLKTGIRSTLFHEGLTIIERDRAAAYFAE HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHEEEE QENGAQVLVCSEIGSEGRNFQFSHHLVLFDLPLNPDLLEQRIGRLDRIGQNHPIEIHVPY CCCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECC LAGTAQEKLFRWYHEGINILQQSCSVGFSIFEVFENRLTPVLSNPLQDTSEQSLEKLIAD CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHH TQLHTQHIKEALNAGRDRLLELNSCNYTIGKELIEAIEAEENCLELENYMSQVYQEYGID HHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QEYHSENAEILRPGNHMKTAHFPGLKEDGMTVTYSRSKALVREDMEFLSWEHPMVYDTME HHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCHHHHHHH MILESELGNATVTTISIKSIKPGTLFLETFYTINSSAPKYLQLDRFIPSLPIRILMDTTG HHHHHCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCHHHHHHCCCCCCEEEEEECCC KNLSGILSYEQLNNLCQPLKRHLGYPVIKQVREEIESILQRTNKIAEDQMKLFIEEAKSM CCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MELTTSQEVNRLESLQKINPAIRDEEIEFFKKKISESNYFINSSTLKLQAIRVVINVS HHHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHCCCCEEEECCCEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA