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The map label for this gene is dedA [H]

Identifier: 54295093

GI number: 54295093

Start: 2486156

End: 2486812

Strand: Direct

Name: dedA [H]

Synonym: lpl2173

Alternate gene names: 54295093

Gene position: 2486156-2486812 (Clockwise)

Preceding gene: 54295090

Following gene: 54295104

Centisome position: 74.31

GC content: 39.42

Gene sequence:

>657_bases
ATGCAAAACATACAGCACCTGATTGACTACATTCTTCATATCGATGTTTATTTAAATGCCTTTGTATCAACATATGGGTT
TTGGACTTATCTTGCGTTATTTGCTGTTATCTTTTGTGAGACAGGCCTTATCGTCACTCCTTTCTTACCAGGAGACTCCC
TGTTATTTGCTGCAGGAAGTATAGCAGCTCAACCAGGAAACCCTATGAATATCATGCTGTTGTTTGTTTTGCTTTTCATG
GCTTCGATATTAGGGAATCAAGTGAATTTCCTTGTTGGACGCGCAATAGGCCCTCGTGTCTTTAGCGCCAAACGCTCCTG
GTTACTGAATCCCAAGCATCTGCATGATACCCATGCTTTTTATGAGAAGCATGGCGGCAAAACAATAATACTGGCGCGTT
TTATTCCCATAATACGCACCTTTGCTCCATTTATTGCAGGTATTGGCAGGATGCGATCATTGCATTTCACGCTTTTCAAT
CTGATCAGCGCCATACTTTGGATTGGAAGTCTTCTTAGCCTGGGATATTATTTAGGCTCAATCCCATTAATAAAAGAGAA
TTTCTCATTAGTTATCTATGGGATCATAGCGATTTCAATTTTACCGCCCATCATCACTTTAATTAGTAAAAAATCGACGT
CCTCAATTAAAAAATAA

Upstream 100 bases:

>100_bases
CTCTCAGCCGAGCGGTTTGAGATAACAACTGATTTTATCCATAACTCAAGTTAGTATAGACACATGGAATTACGTCATAC
ATTTAATCCAAAGAGACTCT

Downstream 100 bases:

>100_bases
TATACTTTAGGGACTTATGCGGGTGCAAAGGGCTCTAGGATGCCTTTTACACCACGCTCTTACTAAGGAACATATCTGTT
GGCAAACAATTGCACTTCTA

Product: hypothetical protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MQNIQHLIDYILHIDVYLNAFVSTYGFWTYLALFAVIFCETGLIVTPFLPGDSLLFAAGSIAAQPGNPMNIMLLFVLLFM
ASILGNQVNFLVGRAIGPRVFSAKRSWLLNPKHLHDTHAFYEKHGGKTIILARFIPIIRTFAPFIAGIGRMRSLHFTLFN
LISAILWIGSLLSLGYYLGSIPLIKENFSLVIYGIIAISILPPIITLISKKSTSSIKK

Sequences:

>Translated_218_residues
MQNIQHLIDYILHIDVYLNAFVSTYGFWTYLALFAVIFCETGLIVTPFLPGDSLLFAAGSIAAQPGNPMNIMLLFVLLFM
ASILGNQVNFLVGRAIGPRVFSAKRSWLLNPKHLHDTHAFYEKHGGKTIILARFIPIIRTFAPFIAGIGRMRSLHFTLFN
LISAILWIGSLLSLGYYLGSIPLIKENFSLVIYGIIAISILPPIITLISKKSTSSIKK
>Mature_218_residues
MQNIQHLIDYILHIDVYLNAFVSTYGFWTYLALFAVIFCETGLIVTPFLPGDSLLFAAGSIAAQPGNPMNIMLLFVLLFM
ASILGNQVNFLVGRAIGPRVFSAKRSWLLNPKHLHDTHAFYEKHGGKTIILARFIPIIRTFAPFIAGIGRMRSLHFTLFN
LISAILWIGSLLSLGYYLGSIPLIKENFSLVIYGIIAISILPPIITLISKKSTSSIKK

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=208, Percent_Identity=52.4038461538462, Blast_Score=234, Evalue=3e-63,
Organism=Escherichia coli, GI1789481, Length=158, Percent_Identity=38.6075949367089, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789384, Length=165, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24255; Mature: 24255

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNIQHLIDYILHIDVYLNAFVSTYGFWTYLALFAVIFCETGLIVTPFLPGDSLLFAAGS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHCCCC
IAAQPGNPMNIMLLFVLLFMASILGNQVNFLVGRAIGPRVFSAKRSWLLNPKHLHDTHAF
CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHH
YEKHGGKTIILARFIPIIRTFAPFIAGIGRMRSLHFTLFNLISAILWIGSLLSLGYYLGS
HHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IPLIKENFSLVIYGIIAISILPPIITLISKKSTSSIKK
CCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCC
>Mature Secondary Structure
MQNIQHLIDYILHIDVYLNAFVSTYGFWTYLALFAVIFCETGLIVTPFLPGDSLLFAAGS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHCCCC
IAAQPGNPMNIMLLFVLLFMASILGNQVNFLVGRAIGPRVFSAKRSWLLNPKHLHDTHAF
CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHH
YEKHGGKTIILARFIPIIRTFAPFIAGIGRMRSLHFTLFNLISAILWIGSLLSLGYYLGS
HHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IPLIKENFSLVIYGIIAISILPPIITLISKKSTSSIKK
CCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]