Click here to switch to the map view.

The map label for this gene is 54294874

Identifier: 54294874

GI number: 54294874

Start: 2191194

End: 2192636

Strand: Direct

Name: 54294874

Synonym: lpl1953

Alternate gene names: NA

Gene position: 2191194-2192636 (Clockwise)

Preceding gene: 54294873

Following gene: 54294875

Centisome position: 65.49

GC content: 39.99

Gene sequence:

>1443_bases
ATGCCTGATGTTCGCGGCAGCCCTGATGCAAACCAAATTCCAGATGATATCTGGCTTGACATTCTTATCAATTATCTTCA
ACCACAAGATATTGTGAGCCTGTCTGAAGTCAACAATCGCTTGAGCAGACTTTTCAAAACTCAACACACTCAATCTGAGC
AATTGAACCGAAAAAAAACATTGGGAATTCTGAAAGTATTTGCAGGATACAGTTCCACTTTCCTGTTTGCACGCCTCAAT
GGTAAGCAAAGATTATTTAAAACCAGAAATTCGAGTGTGGTGGATAGCGATAACATAAACCCAATATTAATGCCCATCTC
TCTGCCAGAGAACATCTCTTTTATTGAATCCATTCAATCAACATCCAACCACACCGTGCTTGTTGGTCGAGACAGTCATG
ATCATATTATAGTGGCAACAAACAAAATCAATCAGGATTATGCAGGGCAAGAAACCAGTCACAACCAAGTAATTTCCCTT
CCGTTACACGACAATAACATTTCTCTGGTATCTGCCGGGAATGAAGAGAACTATATTTTAAACCCTATTTTTCTCTTTTC
CCGCAATACAAGAGGGCAATTGAGTCTTGCATCCTACAAAACAAATGACAGAATACCATTAGGAACCACAATTGGGGAAA
GAAACCACCCGTTACCCATCATACCATTGCCTTACACTATGAAAACAGTAAAACAAATACATTCAGGAATATGGCATAAT
GTGATTAGAGGCTATGATCAATATAATCGACCGCAAATTGCTACTTTTGGAAAAAATTACGATGGGCAATTAGGCACAGG
CGATTGGGAAAACAGAGATACACCTACCCTGATAAAGCTTCCTCCTGAAATGTTTACACTTCATGTAATTGAAACCAGTT
TTTTTCACACCATTGCCATTGGACTTGATAAAAATGGATTCCCTATCGTTGCAAGCTGCGGTTATAACTCCGATGGCCAA
TTGGGATGCGGGGATAAAGATAATAAAAACACATTGAATCCCATCAAAATTCCAGAAAATATGAAATCAGTAGAAATGGT
CGCCACTGGAATAAAACACACCGTTATTGTGGGAAAAGACATAAATAACAAGCCTGTGGTTGCAACCTGTGGGCATAACG
GCTATGGACAACTGGGTACAGGCGATGAACAAAACCGAGTCTGCTTGACTCCCATTCCAATTCCCAAGGACCTAATTACA
ATTGATTATGTTGAAGCCGGCGCCTATCATACAGTCATTTGTGGGCGGAATATAAAAAATCAGCCAATTATAGCCTTATG
TGGGTGTAATTCAAACGGTGAATTGGGGTTTGCACCGCAAAAAATCGCAAAGAAATCATCCCTGATGACCAACCCGGCCC
TGTTTTTTCCGCCGCGACCAGACAAGGGCACAATAAATAATTTAATGAAAATTAGTAAATTCTCGCCATGTAATTTGCTA
TGA

Upstream 100 bases:

>100_bases
ATAAGCGCCTTATGCTGCTTGAAGAAGAATTCATTTTCCATTCTGAAGATACTGGATTATAATAAAACAATATACCACCC
ACCGTTTATAAAAGTAAAAC

Downstream 100 bases:

>100_bases
GGTTTAATTTATTTCTACAGAGAAAAATGAATGTTCAAAAGCTCGTTATTTCTGCTTTGTTTTTTGTTATGTCTCTGTGA
GAATAAAACCAATCTTCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: S-Layer Domain Protein

Number of amino acids: Translated: 480; Mature: 479

Protein sequence:

>480_residues
MPDVRGSPDANQIPDDIWLDILINYLQPQDIVSLSEVNNRLSRLFKTQHTQSEQLNRKKTLGILKVFAGYSSTFLFARLN
GKQRLFKTRNSSVVDSDNINPILMPISLPENISFIESIQSTSNHTVLVGRDSHDHIIVATNKINQDYAGQETSHNQVISL
PLHDNNISLVSAGNEENYILNPIFLFSRNTRGQLSLASYKTNDRIPLGTTIGERNHPLPIIPLPYTMKTVKQIHSGIWHN
VIRGYDQYNRPQIATFGKNYDGQLGTGDWENRDTPTLIKLPPEMFTLHVIETSFFHTIAIGLDKNGFPIVASCGYNSDGQ
LGCGDKDNKNTLNPIKIPENMKSVEMVATGIKHTVIVGKDINNKPVVATCGHNGYGQLGTGDEQNRVCLTPIPIPKDLIT
IDYVEAGAYHTVICGRNIKNQPIIALCGCNSNGELGFAPQKIAKKSSLMTNPALFFPPRPDKGTINNLMKISKFSPCNLL

Sequences:

>Translated_480_residues
MPDVRGSPDANQIPDDIWLDILINYLQPQDIVSLSEVNNRLSRLFKTQHTQSEQLNRKKTLGILKVFAGYSSTFLFARLN
GKQRLFKTRNSSVVDSDNINPILMPISLPENISFIESIQSTSNHTVLVGRDSHDHIIVATNKINQDYAGQETSHNQVISL
PLHDNNISLVSAGNEENYILNPIFLFSRNTRGQLSLASYKTNDRIPLGTTIGERNHPLPIIPLPYTMKTVKQIHSGIWHN
VIRGYDQYNRPQIATFGKNYDGQLGTGDWENRDTPTLIKLPPEMFTLHVIETSFFHTIAIGLDKNGFPIVASCGYNSDGQ
LGCGDKDNKNTLNPIKIPENMKSVEMVATGIKHTVIVGKDINNKPVVATCGHNGYGQLGTGDEQNRVCLTPIPIPKDLIT
IDYVEAGAYHTVICGRNIKNQPIIALCGCNSNGELGFAPQKIAKKSSLMTNPALFFPPRPDKGTINNLMKISKFSPCNLL
>Mature_479_residues
PDVRGSPDANQIPDDIWLDILINYLQPQDIVSLSEVNNRLSRLFKTQHTQSEQLNRKKTLGILKVFAGYSSTFLFARLNG
KQRLFKTRNSSVVDSDNINPILMPISLPENISFIESIQSTSNHTVLVGRDSHDHIIVATNKINQDYAGQETSHNQVISLP
LHDNNISLVSAGNEENYILNPIFLFSRNTRGQLSLASYKTNDRIPLGTTIGERNHPLPIIPLPYTMKTVKQIHSGIWHNV
IRGYDQYNRPQIATFGKNYDGQLGTGDWENRDTPTLIKLPPEMFTLHVIETSFFHTIAIGLDKNGFPIVASCGYNSDGQL
GCGDKDNKNTLNPIKIPENMKSVEMVATGIKHTVIVGKDINNKPVVATCGHNGYGQLGTGDEQNRVCLTPIPIPKDLITI
DYVEAGAYHTVICGRNIKNQPIIALCGCNSNGELGFAPQKIAKKSSLMTNPALFFPPRPDKGTINNLMKISKFSPCNLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4557445, Length=283, Percent_Identity=26.8551236749117, Blast_Score=67, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53221; Mature: 53090

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: PS50012 RCC1_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDVRGSPDANQIPDDIWLDILINYLQPQDIVSLSEVNNRLSRLFKTQHTQSEQLNRKKT
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LGILKVFAGYSSTFLFARLNGKQRLFKTRNSSVVDSDNINPILMPISLPENISFIESIQS
HHHHHHHCCCCCEEEEEEECCHHHHHHCCCCCEECCCCCCEEEEEEECCCCHHHHHHHHC
TSNHTVLVGRDSHDHIIVATNKINQDYAGQETSHNQVISLPLHDNNISLVSAGNEENYIL
CCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCEEE
NPIFLFSRNTRGQLSLASYKTNDRIPLGTTIGERNHPLPIIPLPYTMKTVKQIHSGIWHN
EEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHH
VIRGYDQYNRPQIATFGKNYDGQLGTGDWENRDTPTLIKLPPEMFTLHVIETSFFHTIAI
HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECHHHEEEEEEEECCEEEEEE
GLDKNGFPIVASCGYNSDGQLGCGDKDNKNTLNPIKIPENMKSVEMVATGIKHTVIVGKD
EECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCEEEEEEECC
INNKPVVATCGHNGYGQLGTGDEQNRVCLTPIPIPKDLITIDYVEAGAYHTVICGRNIKN
CCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCEEEEEECCCCCC
QPIIALCGCNSNGELGFAPQKIAKKSSLMTNPALFFPPRPDKGTINNLMKISKFSPCNLL
CCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PDVRGSPDANQIPDDIWLDILINYLQPQDIVSLSEVNNRLSRLFKTQHTQSEQLNRKKT
CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LGILKVFAGYSSTFLFARLNGKQRLFKTRNSSVVDSDNINPILMPISLPENISFIESIQS
HHHHHHHCCCCCEEEEEEECCHHHHHHCCCCCEECCCCCCEEEEEEECCCCHHHHHHHHC
TSNHTVLVGRDSHDHIIVATNKINQDYAGQETSHNQVISLPLHDNNISLVSAGNEENYIL
CCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCEEE
NPIFLFSRNTRGQLSLASYKTNDRIPLGTTIGERNHPLPIIPLPYTMKTVKQIHSGIWHN
EEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHH
VIRGYDQYNRPQIATFGKNYDGQLGTGDWENRDTPTLIKLPPEMFTLHVIETSFFHTIAI
HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECHHHEEEEEEEECCEEEEEE
GLDKNGFPIVASCGYNSDGQLGCGDKDNKNTLNPIKIPENMKSVEMVATGIKHTVIVGKD
EECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCEEEEEEECC
INNKPVVATCGHNGYGQLGTGDEQNRVCLTPIPIPKDLITIDYVEAGAYHTVICGRNIKN
CCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCEEEEEECCCCCC
QPIIALCGCNSNGELGFAPQKIAKKSSLMTNPALFFPPRPDKGTINNLMKISKFSPCNLL
CCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA