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The map label for this gene is 54294859

Identifier: 54294859

GI number: 54294859

Start: 2175726

End: 2176286

Strand: Direct

Name: 54294859

Synonym: lpl1938

Alternate gene names: NA

Gene position: 2175726-2176286 (Clockwise)

Preceding gene: 54294857

Following gene: 54294860

Centisome position: 65.03

GC content: 35.47

Gene sequence:

>561_bases
ATGAATATAAGTAATACGAAAGAACGGATATTAGCAGTTGCGGAAGCATTGATCCAAAAAGACGGATATAACGCCTTTAG
TTTCAAAGATATTGCAACAGCCATCCATATTAAAACTGCCAGCATCCATTATCATTTTCCTTCAAAAGAAGATCTTGGTG
TGGCAGTTATATCCTGGCATGCCGATAAAATTGCTGCTGTGTTATCTGACATAAGCAATAATTCGTCGTTATCAGCCAAG
GAAAAAATTCAAAAATTCTTTGATGCCATTTTAACAATCACCTACAACGCTGAAAACAAAATGTGCCTCGGAGGTATGTT
CGCTTCTGATTTTCAATCATTACCCGTTTCAATTCAAAATCAGGCAAAAAAATTTTTTGAGCTTATCATTGAATGGCTTA
AAGGAGTTCTTGAAGCAAGTGCTTATGATAATGAATCCGCATTATCTGTCGCAAAACAAATTATTTCGTTGATTGAAGGC
GGGTTATTATTAGCAAGATTATATGGAGATGAAACCTTTCTGGAAGGAGTTCGGCACTTTATTGATCAAACAATAAAGTG
A

Upstream 100 bases:

>100_bases
CCATCCACTCCTATTTATATAAACAAGTGTTATTTTAATTTGATATAGAAAACTATAATAAGCTTGACAATCTATCTATG
AGTAGGTAAAATTCATGCCT

Downstream 100 bases:

>100_bases
TTTTTTTTAACATTCAAAACTATCTATTAGTAGATAGAATTTTATGGGGAAACGTTATATGAATAAAGTCAAAGCAAAAA
TTATAGCCTTTACAACAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Transcriptional Regulatory Protein; Regulatory Protein TetR; TetR Family Regulatory Protein; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein; TetR/AcrR Family Transcriptional Regulator; AcrR Family Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Regulatory Protein Tetr; Transcriptional Regulator Of TetR Family Protein; TetR-Family Transcriptional Regulator; HTH-Type Protein SlmA; Transcriptional Regulator Protein Tetr Family

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MNISNTKERILAVAEALIQKDGYNAFSFKDIATAIHIKTASIHYHFPSKEDLGVAVISWHADKIAAVLSDISNNSSLSAK
EKIQKFFDAILTITYNAENKMCLGGMFASDFQSLPVSIQNQAKKFFELIIEWLKGVLEASAYDNESALSVAKQIISLIEG
GLLLARLYGDETFLEGVRHFIDQTIK

Sequences:

>Translated_186_residues
MNISNTKERILAVAEALIQKDGYNAFSFKDIATAIHIKTASIHYHFPSKEDLGVAVISWHADKIAAVLSDISNNSSLSAK
EKIQKFFDAILTITYNAENKMCLGGMFASDFQSLPVSIQNQAKKFFELIIEWLKGVLEASAYDNESALSVAKQIISLIEG
GLLLARLYGDETFLEGVRHFIDQTIK
>Mature_186_residues
MNISNTKERILAVAEALIQKDGYNAFSFKDIATAIHIKTASIHYHFPSKEDLGVAVISWHADKIAAVLSDISNNSSLSAK
EKIQKFFDAILTITYNAENKMCLGGMFASDFQSLPVSIQNQAKKFFELIIEWLKGVLEASAYDNESALSVAKQIISLIEG
GLLLARLYGDETFLEGVRHFIDQTIK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20618; Mature: 20618

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISNTKERILAVAEALIQKDGYNAFSFKDIATAIHIKTASIHYHFPSKEDLGVAVISWH
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEEEEEEEECCCCCCCCEEEEEEC
ADKIAAVLSDISNNSSLSAKEKIQKFFDAILTITYNAENKMCLGGMFASDFQSLPVSIQN
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEEECCCCCEEECCHHHHHHHHCCCHHHH
QAKKFFELIIEWLKGVLEASAYDNESALSVAKQIISLIEGGLLLARLYGDETFLEGVRHF
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHH
IDQTIK
HHHCCC
>Mature Secondary Structure
MNISNTKERILAVAEALIQKDGYNAFSFKDIATAIHIKTASIHYHFPSKEDLGVAVISWH
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEEEEEEEECCCCCCCCEEEEEEC
ADKIAAVLSDISNNSSLSAKEKIQKFFDAILTITYNAENKMCLGGMFASDFQSLPVSIQN
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEEECCCCCEEECCHHHHHHHHCCCHHHH
QAKKFFELIIEWLKGVLEASAYDNESALSVAKQIISLIEGGLLLARLYGDETFLEGVRHF
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHH
IDQTIK
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA