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The map label for this gene is yrkF [H]

Identifier: 54294656

GI number: 54294656

Start: 1936358

End: 1936729

Strand: Direct

Name: yrkF [H]

Synonym: lpl1733

Alternate gene names: 54294656

Gene position: 1936358-1936729 (Clockwise)

Preceding gene: 54294655

Following gene: 54294657

Centisome position: 57.88

GC content: 34.14

Gene sequence:

>372_bases
ATGAAGCAACATTCACAAGGTTTTTTAAAACTGGTAACAGAAGCAAAAAATCGTATAAACGAGATTAGTCCTCAAATTTT
AAAAAGTAAAATCGATAACAATGAAAAGTTAATTATAATAGATGTTCGTGAAACAGATGAATGGGAAACAGGTAAAATCC
CGAATGCAATTCATTTAAGTAAAGGGATTATTGAGCGTGACATTGAAAAAATTATCACAGACAATCAAAGCAATATTGTT
GTTTATTGCAGCGGGGGTTATCGCTGCGCTTTGGTAGCCGATAGTCTACAAAAAATGGGATATACCAATGTATTTTCTCT
GGATACTGGATTGCAAGGATGGCTAGATGCTGGATACAGCCTGGTAAAATAA

Upstream 100 bases:

>100_bases
AATACCCTGACAAGAAGGGAAATTGGTCTGTTAATTAAATTAATTAAATTTTTTATCAATAACCGTTTATCTTTTAAAAC
TAAATAGAGTGAGAATAAGC

Downstream 100 bases:

>100_bases
TTGAATATCTCCCAATAATGAGCCTTGGGCTATATCTTTGAACAATGTAATTGCACGACTGGATTGCCATTTTCCGCAAT
TTAGTGCACTATTTCACTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MKQHSQGFLKLVTEAKNRINEISPQILKSKIDNNEKLIIIDVRETDEWETGKIPNAIHLSKGIIERDIEKIITDNQSNIV
VYCSGGYRCALVADSLQKMGYTNVFSLDTGLQGWLDAGYSLVK

Sequences:

>Translated_123_residues
MKQHSQGFLKLVTEAKNRINEISPQILKSKIDNNEKLIIIDVRETDEWETGKIPNAIHLSKGIIERDIEKIITDNQSNIV
VYCSGGYRCALVADSLQKMGYTNVFSLDTGLQGWLDAGYSLVK
>Mature_123_residues
MKQHSQGFLKLVTEAKNRINEISPQILKSKIDNNEKLIIIDVRETDEWETGKIPNAIHLSKGIIERDIEKIITDNQSNIV
VYCSGGYRCALVADSLQKMGYTNVFSLDTGLQGWLDAGYSLVK

Specific function: Unknown

COG id: COG0607

COG function: function code P; Rhodanese-related sulfurtransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001763
- InterPro:   IPR001455 [H]

Pfam domain/function: PF00581 Rhodanese; PF01206 SirA [H]

EC number: NA

Molecular weight: Translated: 13840; Mature: 13840

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQHSQGFLKLVTEAKNRINEISPQILKSKIDNNEKLIIIDVRETDEWETGKIPNAIHLS
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHH
KGIIERDIEKIITDNQSNIVVYCSGGYRCALVADSLQKMGYTNVFSLDTGLQGWLDAGYS
HHHHHHHHHHHHCCCCCCEEEEECCCCEEEHHHHHHHHCCCCCEEECCCCCHHHHHCCHH
LVK
HCC
>Mature Secondary Structure
MKQHSQGFLKLVTEAKNRINEISPQILKSKIDNNEKLIIIDVRETDEWETGKIPNAIHLS
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHH
KGIIERDIEKIITDNQSNIVVYCSGGYRCALVADSLQKMGYTNVFSLDTGLQGWLDAGYS
HHHHHHHHHHHHCCCCCCEEEEECCCCEEEHHHHHHHHCCCCCEEECCCCCHHHHHCCHH
LVK
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]