BacMap

Definition	Legionella pneumophila str. Lens, complete genome.
Accession	NC_006369
Length	3,345,687

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The map label for this gene is ybbO [H]

Identifier: 54294572

GI number: 54294572

Start: 1836050

End: 1836901

Strand: Reverse

Name: ybbO [H]

Synonym: lpl1648

Alternate gene names: 54294572

Gene position: 1836901-1836050 (Counterclockwise)

Preceding gene: 54294574

Following gene: 54294571

Centisome position: 54.9

GC content: 39.08

Gene sequence:

>852_bases
ATGGCGATGAATACAAAAGTTATTTTGATCACAGGATGCTCCAGTGGGATAGGTTTTGATGCCGTTTTTGCTTTGAAAAA
AAGAGGACATAGAGTGATTGCATCTTGCAGAAAAACAGAGGATGTCCAAAAATTACTAAATAAAGGAGTCGAGGCTCTCT
TGCTGGATGTAAGTAACCCTATTTCAATCCGAAGTGCATTCGCGCAGTTGTTAATTATGACATCGGGGCATCTGGATGTA
TTGATTAATAATGCAGGATACGGTCAGGTAGGTGCTCTTGAAGATATTTCTCGGGATATTCTTCGCCAACAATTTGAAAC
GAATGTATTTGGTTTGCAAGATTTGACCAATTTGGCTATTCCAGTTATGAGGGGACAAGGCGGGGGACGCATAATCAATA
TCAGCTCTATACTTGGCGTAGTTAGCATGCCATTTCGAGGTGCTTATAATGCTTCCAAATATGCATTGGAGGGCTTAAGT
GACACACTTCGGCTGGAATTGTCTGGTTCAGGTATTAAGGTCATAACCATAGAGCCTGGTCCTATAAATAGCCGATTTCG
TGATAATGCGGTGGACTTATCTTTACAACAAATACCAATGGAAAAAAGTTATTTCAAGAATCAATACCGAAATATGCTGA
GCAATTTTAAACAGAAGAAGGCAGACTCATTTTTCACCCGGGATACTGATGCAGTGATAAAAAAACTGGTTCATGCCGTG
GAGTCAAGGAAACCAAAACCCAAGTACCCTGTAACTTTCCCAGCTTATTTTTTAATTGGTTTAAAACGATTCTTTACTAC
CCGTTTATTAGATAGGTTTATTTTATTTTTATCCAGGAAGGAGCTAGGTTAA

Upstream 100 bases:

>100_bases
TATAAACATTTTTTTAATTAATATTGCTCCCAAATGAGTTTTATAGTGGTAGTAATTGGATAAAGAGCTTAGTACGATAG
TTAAAAATTAAGCATAGGTC

Downstream 100 bases:

>100_bases
AGCAACTTATTGGTAATATTATAAAATAGTCATAAGTTGGTGTTGATAGTTAGCAACTACTGTACAGACCTTTCTTAAAA
AGATACTATAGCTATTATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MAMNTKVILITGCSSGIGFDAVFALKKRGHRVIASCRKTEDVQKLLNKGVEALLLDVSNPISIRSAFAQLLIMTSGHLDV
LINNAGYGQVGALEDISRDILRQQFETNVFGLQDLTNLAIPVMRGQGGGRIINISSILGVVSMPFRGAYNASKYALEGLS
DTLRLELSGSGIKVITIEPGPINSRFRDNAVDLSLQQIPMEKSYFKNQYRNMLSNFKQKKADSFFTRDTDAVIKKLVHAV
ESRKPKPKYPVTFPAYFLIGLKRFFTTRLLDRFILFLSRKELG

Sequences:

>Translated_283_residues
MAMNTKVILITGCSSGIGFDAVFALKKRGHRVIASCRKTEDVQKLLNKGVEALLLDVSNPISIRSAFAQLLIMTSGHLDV
LINNAGYGQVGALEDISRDILRQQFETNVFGLQDLTNLAIPVMRGQGGGRIINISSILGVVSMPFRGAYNASKYALEGLS
DTLRLELSGSGIKVITIEPGPINSRFRDNAVDLSLQQIPMEKSYFKNQYRNMLSNFKQKKADSFFTRDTDAVIKKLVHAV
ESRKPKPKYPVTFPAYFLIGLKRFFTTRLLDRFILFLSRKELG
>Mature_282_residues
AMNTKVILITGCSSGIGFDAVFALKKRGHRVIASCRKTEDVQKLLNKGVEALLLDVSNPISIRSAFAQLLIMTSGHLDVL
INNAGYGQVGALEDISRDILRQQFETNVFGLQDLTNLAIPVMRGQGGGRIINISSILGVVSMPFRGAYNASKYALEGLSD
TLRLELSGSGIKVITIEPGPINSRFRDNAVDLSLQQIPMEKSYFKNQYRNMLSNFKQKKADSFFTRDTDAVIKKLVHAVE
SRKPKPKYPVTFPAYFLIGLKRFFTTRLLDRFILFLSRKELG

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=264, Percent_Identity=31.8181818181818, Blast_Score=118, Evalue=5e-27,
Organism=Homo sapiens, GI150247226, Length=293, Percent_Identity=29.6928327645051, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI7706318, Length=196, Percent_Identity=33.1632653061224, Blast_Score=107, Evalue=9e-24,
Organism=Homo sapiens, GI50726952, Length=282, Percent_Identity=28.0141843971631, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI223718074, Length=259, Percent_Identity=28.5714285714286, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI40548397, Length=295, Percent_Identity=31.864406779661, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI214010158, Length=295, Percent_Identity=31.864406779661, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI214010156, Length=295, Percent_Identity=31.864406779661, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI22758144, Length=295, Percent_Identity=31.864406779661, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI20149619, Length=201, Percent_Identity=31.3432835820896, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI19743808, Length=285, Percent_Identity=28.7719298245614, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI22507405, Length=269, Percent_Identity=32.7137546468402, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI44680136, Length=266, Percent_Identity=28.5714285714286, Blast_Score=98, Evalue=8e-21,
Organism=Homo sapiens, GI44680133, Length=266, Percent_Identity=28.5714285714286, Blast_Score=98, Evalue=8e-21,
Organism=Homo sapiens, GI17738292, Length=266, Percent_Identity=28.5714285714286, Blast_Score=98, Evalue=8e-21,
Organism=Homo sapiens, GI4504503, Length=295, Percent_Identity=25.4237288135593, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI119392083, Length=307, Percent_Identity=28.6644951140065, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI32483357, Length=188, Percent_Identity=29.2553191489362, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI157739938, Length=194, Percent_Identity=29.3814432989691, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI109715829, Length=195, Percent_Identity=31.7948717948718, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI32455239, Length=212, Percent_Identity=31.1320754716981, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI5031765, Length=212, Percent_Identity=31.1320754716981, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI126723191, Length=179, Percent_Identity=28.4916201117318, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI142976729, Length=193, Percent_Identity=29.0155440414508, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI225579078, Length=196, Percent_Identity=31.1224489795918, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI59889578, Length=165, Percent_Identity=32.7272727272727, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI5031737, Length=191, Percent_Identity=30.8900523560209, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI7705925, Length=175, Percent_Identity=26.2857142857143, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1786701, Length=269, Percent_Identity=42.0074349442379, Blast_Score=212, Evalue=2e-56,
Organism=Escherichia coli, GI87082100, Length=184, Percent_Identity=31.5217391304348, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787820, Length=193, Percent_Identity=32.1243523316062, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788459, Length=190, Percent_Identity=33.6842105263158, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787335, Length=236, Percent_Identity=27.5423728813559, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786812, Length=184, Percent_Identity=29.3478260869565, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87082160, Length=185, Percent_Identity=27.5675675675676, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789378, Length=217, Percent_Identity=32.7188940092166, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI2367365, Length=187, Percent_Identity=32.0855614973262, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71997402, Length=246, Percent_Identity=32.520325203252, Blast_Score=114, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17570069, Length=219, Percent_Identity=33.7899543378995, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI115534660, Length=293, Percent_Identity=26.2798634812287, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17557780, Length=288, Percent_Identity=26.0416666666667, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI32563809, Length=287, Percent_Identity=24.390243902439, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17507613, Length=287, Percent_Identity=24.390243902439, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560676, Length=194, Percent_Identity=30.9278350515464, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193210355, Length=259, Percent_Identity=27.4131274131274, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=199, Percent_Identity=28.1407035175879, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=197, Percent_Identity=32.48730964467, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=196, Percent_Identity=30.6122448979592, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI72001658, Length=209, Percent_Identity=33.0143540669856, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=201, Percent_Identity=28.8557213930348, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=200, Percent_Identity=33.5, Blast_Score=87, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6322067, Length=231, Percent_Identity=29.4372294372294, Blast_Score=85, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6322861, Length=215, Percent_Identity=27.4418604651163, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24651139, Length=271, Percent_Identity=31.3653136531365, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=31.6326530612245, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI28571526, Length=184, Percent_Identity=33.695652173913, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24643142, Length=206, Percent_Identity=32.0388349514563, Blast_Score=88, Evalue=7e-18,
Organism=Drosophila melanogaster, GI24580925, Length=202, Percent_Identity=30.6930693069307, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24644339, Length=188, Percent_Identity=33.5106382978723, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI21355319, Length=208, Percent_Identity=31.25, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24641232, Length=203, Percent_Identity=31.5270935960591, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21357041, Length=184, Percent_Identity=34.2391304347826, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24647946, Length=226, Percent_Identity=29.2035398230088, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI45553409, Length=225, Percent_Identity=29.3333333333333, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24647948, Length=225, Percent_Identity=29.3333333333333, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI23397609, Length=194, Percent_Identity=30.9278350515464, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI116007236, Length=211, Percent_Identity=30.3317535545024, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24641388, Length=215, Percent_Identity=29.7674418604651, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI28571387, Length=200, Percent_Identity=31, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI116007238, Length=194, Percent_Identity=30.4123711340206, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21355631, Length=169, Percent_Identity=27.810650887574, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI281364494, Length=196, Percent_Identity=30.6122448979592, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31496; Mature: 31365

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMNTKVILITGCSSGIGFDAVFALKKRGHRVIASCRKTEDVQKLLNKGVEALLLDVSNP
CCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHEEEEECCCC
ISIRSAFAQLLIMTSGHLDVLINNAGYGQVGALEDISRDILRQQFETNVFGLQDLTNLAI
HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHE
PVMRGQGGGRIINISSILGVVSMPFRGAYNASKYALEGLSDTLRLELSGSGIKVITIEPG
EEEECCCCCEEEEHHHHHHHHHCCCCCCCCCHHHHHHCCCCEEEEEECCCCEEEEEECCC
PINSRFRDNAVDLSLQQIPMEKSYFKNQYRNMLSNFKQKKADSFFTRDTDAVIKKLVHAV
CCCCCCCCCHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ESRKPKPKYPVTFPAYFLIGLKRFFTTRLLDRFILFLSRKELG
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AMNTKVILITGCSSGIGFDAVFALKKRGHRVIASCRKTEDVQKLLNKGVEALLLDVSNP
CCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHEEEEECCCC
ISIRSAFAQLLIMTSGHLDVLINNAGYGQVGALEDISRDILRQQFETNVFGLQDLTNLAI
HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHE
PVMRGQGGGRIINISSILGVVSMPFRGAYNASKYALEGLSDTLRLELSGSGIKVITIEPG
EEEECCCCCEEEEHHHHHHHHHCCCCCCCCCHHHHHHCCCCEEEEEECCCCEEEEEECCC
PINSRFRDNAVDLSLQQIPMEKSYFKNQYRNMLSNFKQKKADSFFTRDTDAVIKKLVHAV
CCCCCCCCCHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ESRKPKPKYPVTFPAYFLIGLKRFFTTRLLDRFILFLSRKELG
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]