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The map label for this gene is scpB [H]

Identifier: 54294519

GI number: 54294519

Start: 1770611

End: 1771192

Strand: Reverse

Name: scpB [H]

Synonym: lpl1595

Alternate gene names: 54294519

Gene position: 1771192-1770611 (Counterclockwise)

Preceding gene: 54294520

Following gene: 54294518

Centisome position: 52.94

GC content: 38.49

Gene sequence:

>582_bases
ATGATTGACAATGAATTAAAAAATATTGTTGAAGCTTTGGTATTATCCAGTAATGAGCCCGTTACTTTAGAAAAAATACA
AGAAACTTTTGATGAGTGGCAAAGACCAACACTAGAAGATTTGCAGGCTATAATAGAGAGCTTAAAGGTAGATTATTCTT
CCCGTGCTTTTGAGCTTATCCAGGTTGCAGGTGGTTTTAAGGTACAAACAAAATCCAAATATGCCACTTGGGTTGCTCGT
CTCCAAATCGAGAAGCCGGCAAAATATTCGCGTGCACTGCTTGAAACTTTGGCAATAATTGCTTACAAGCAACCTGTTAC
GCGCGCTGATATTGAAGACATTAGAGGAGTTGCCGTTAACAGCCAGATCATGAAAACGTTAATGGAGAGAGAGTGGATTC
GTATAGCAGGCTATAAGGATGTAGTGGGAAAACCAGCTGTTTATACTACGACAAAAGAATTTTTAAATTACTTTAACTTA
AATTACCTAAGTGAACTTCCTCCCTTACCTGAAATAATGGATACATTAACCCTGCACGAGGCAACCCAATCTATAGAAGA
GTGTACGCAAAATGAGCAGTGA

Upstream 100 bases:

>100_bases
GTTGTGAGTTTTTTAGCTATTCTTGAACTGGCTAAGCAGTCTTTATTGATCATTACGCAAACTCAGCCATTTTCACCTAT
ACATTTGCAGGCTGCATGAG

Downstream 100 bases:

>100_bases
AAGATTACAGAAAATATTAAGTCAGGCCGGACTCGGATCTCGTCGTGAAATGGAGCGGTGGATTGATAATGGTTGGGTGC
AGGTTAATGGCAAACCAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MIDNELKNIVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSSRAFELIQVAGGFKVQTKSKYATWVAR
LQIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGVAVNSQIMKTLMEREWIRIAGYKDVVGKPAVYTTTKEFLNYFNL
NYLSELPPLPEIMDTLTLHEATQSIEECTQNEQ

Sequences:

>Translated_193_residues
MIDNELKNIVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSSRAFELIQVAGGFKVQTKSKYATWVAR
LQIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGVAVNSQIMKTLMEREWIRIAGYKDVVGKPAVYTTTKEFLNYFNL
NYLSELPPLPEIMDTLTLHEATQSIEECTQNEQ
>Mature_193_residues
MIDNELKNIVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSSRAFELIQVAGGFKVQTKSKYATWVAR
LQIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGVAVNSQIMKTLMEREWIRIAGYKDVVGKPAVYTTTKEFLNYFNL
NYLSELPPLPEIMDTLTLHEATQSIEECTQNEQ

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 22132; Mature: 22132

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDNELKNIVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSSRAFELI
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH
QVAGGFKVQTKSKYATWVARLQIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGVAVN
HHHCCCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHH
SQIMKTLMEREWIRIAGYKDVVGKPAVYTTTKEFLNYFNLNYLSELPPLPEIMDTLTLHE
HHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHH
ATQSIEECTQNEQ
HHHHHHHHHCCCC
>Mature Secondary Structure
MIDNELKNIVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSSRAFELI
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH
QVAGGFKVQTKSKYATWVARLQIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGVAVN
HHHCCCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHH
SQIMKTLMEREWIRIAGYKDVVGKPAVYTTTKEFLNYFNLNYLSELPPLPEIMDTLTLHE
HHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHH
ATQSIEECTQNEQ
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]