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The map label for this gene is recJ [H]

Identifier: 54294498

GI number: 54294498

Start: 1746427

End: 1748166

Strand: Reverse

Name: recJ [H]

Synonym: lpl1567

Alternate gene names: 54294498

Gene position: 1748166-1746427 (Counterclockwise)

Preceding gene: 54294499

Following gene: 54294497

Centisome position: 52.25

GC content: 39.89

Gene sequence:

>1740_bases
ATGCTGATTAAACAACGACAACAGCCTGAGTTTACTGTTAATTTACCTAATGTACCTGATGTATTAAAACGTATTTATAT
AACACGAGGCATTAGTGACGAATCTCAACTTGATAAACAATTACAAACATTACTTCCTTTTCACACTTTAAAAGGCATTA
ATGAAGCTTGTCTAAGATTAGAGAATGCTTTGCGTTCAGAGCAACGTATTCTTATTATCGGTGATTTTGATGCCGATGGG
GCAACTTCTACGGCATTAGCCATTACTGCCTTGCGTGCTATGGGTGCCAAGTTTGTAGAGTACTTGGTACCTAATCGATT
TGAATTTGGTTATGGTCTTACTCCTGCTATTGTTGAAGTGGCAAGCAAATGGCAACCTCATTTAATTATCACTGTTGATA
ATGGTATAGCCAGTTTTGAAGGAGTAGATGCGGCTAATAAAATGGGAATAGATGTATTAATTACTGATCATCATTTACCA
GCAGAATCACTACCTGATGCTTGTGCAATTGTTAATCCCAATCAGCCTGGTTGTTTATTTCCAAGCAAATCAATTGCGGG
AGTTGGCGTTATTTTTTACGTTATGCTGGCATTGCGCAGGCATCTTTCCAATTGTAACTGGTTTAATGAAATCAACATAC
CTGAGCCTAATATGGCGAGTTTTCTGGATTTGGTTGCATTAGGGACTGTAGCCGACGTTGTGGGGCTTGACCAAAATAAC
AGGATCATGGTTAATCAAGGCATGATGCGTATTCGTCAAGGACAATGCAGAGAGGGAATAAATGCCTTGATTGAAATTGC
TGGTAGAGATTACTCCAGGCTAAGAGAGTCTGACCTTGGTTTTGCTATAGCGCCAAGATTAAACGCCGCAGGCCGTTTGG
ATGATATGTCGCTTGGTATTGAATGTTTGATTACGACGGATCCAAAAATGGCAAGAAATTTCTGTCAACAGTTGGATGAG
TTAAATCTGGAAAGAAGGCAAATAGAATCTGAAATGAAAGAGCAAGCCATGCTTGCTTTGGAAAAATTGTCAATTAATGA
TGAAGAGAATAAGCAATTACCGGTTGCCTTGTGCCTTCATGATAAAACCTGGCATCAAGGAGTGATAGGAATCTTGGCAG
GAAGGATGAAGGAAAAATATCATCGTCCTGTCATTGCATTTGCTTCTGTCAGTGACCATGAATTAAAGGGCTCAGCACGT
TCTGTCCCCGATTTAAACATTAGAGATGTATTGGCGGCTGTTGATAAAGACAATCCAGGACTGATTCTTAAATTCGGAGG
ACATGCTATGGCTGCTGGCTTAAGTATTAGCCCCGAATTATTGAATGATTTTCGCTCAGCATTCGTATCAGAGGTTCTGA
AACATCTTGACTTATCACAGTGCGAAGGAGAAATACTGACGGACGGACCATTGCAATCCCATGAACTGAGTTTGGAAACA
GCACAATTAATACAACAAGCTGGTCCTTGGGGCCAAGCGTTTGCAGAACCCGTATTTGATAATATATTTGAAATTCTGGA
TCAACGAATTGTCGGTAAAAATCATTTAAAAATGACATTAATTTCCTCACAAGGAGGGGAGCCACTGGATGCCATTGCTT
TTAATGTGGATTTAAAATCCTGGCCTAATCATAGGATTAAGTACATTCATGCCGCCTATAAACTGGATATCAATTTTTAT
CAGGGGAGAACAAGGCTCCAATTGCTCATCCAGGCAATGAATCCTGTTCAGCAAGCATAA

Upstream 100 bases:

>100_bases
GTTGAAATAAAAAAAATACCGGCACATTGGTACTGGAACAATTGTGCTTTAATTAAAGCCAAATCTCATTGGTTTACTCG
ATTATGGAGAAGTCTGACGC

Downstream 100 bases:

>100_bases
ACTCTTAAATTGATGCAATTTTTGTGTATTTCTCAAACAACAATGTATAATGTTATATTTGCTTTAAATTGATTAAACGT
GGTTAATAGTATTTTTTCCA

Product: single-stranded-DNA-specific exonuclease RecJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 579; Mature: 579

Protein sequence:

>579_residues
MLIKQRQQPEFTVNLPNVPDVLKRIYITRGISDESQLDKQLQTLLPFHTLKGINEACLRLENALRSEQRILIIGDFDADG
ATSTALAITALRAMGAKFVEYLVPNRFEFGYGLTPAIVEVASKWQPHLIITVDNGIASFEGVDAANKMGIDVLITDHHLP
AESLPDACAIVNPNQPGCLFPSKSIAGVGVIFYVMLALRRHLSNCNWFNEINIPEPNMASFLDLVALGTVADVVGLDQNN
RIMVNQGMMRIRQGQCREGINALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGIECLITTDPKMARNFCQQLDE
LNLERRQIESEMKEQAMLALEKLSINDEENKQLPVALCLHDKTWHQGVIGILAGRMKEKYHRPVIAFASVSDHELKGSAR
SVPDLNIRDVLAAVDKDNPGLILKFGGHAMAAGLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLET
AQLIQQAGPWGQAFAEPVFDNIFEILDQRIVGKNHLKMTLISSQGGEPLDAIAFNVDLKSWPNHRIKYIHAAYKLDINFY
QGRTRLQLLIQAMNPVQQA

Sequences:

>Translated_579_residues
MLIKQRQQPEFTVNLPNVPDVLKRIYITRGISDESQLDKQLQTLLPFHTLKGINEACLRLENALRSEQRILIIGDFDADG
ATSTALAITALRAMGAKFVEYLVPNRFEFGYGLTPAIVEVASKWQPHLIITVDNGIASFEGVDAANKMGIDVLITDHHLP
AESLPDACAIVNPNQPGCLFPSKSIAGVGVIFYVMLALRRHLSNCNWFNEINIPEPNMASFLDLVALGTVADVVGLDQNN
RIMVNQGMMRIRQGQCREGINALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGIECLITTDPKMARNFCQQLDE
LNLERRQIESEMKEQAMLALEKLSINDEENKQLPVALCLHDKTWHQGVIGILAGRMKEKYHRPVIAFASVSDHELKGSAR
SVPDLNIRDVLAAVDKDNPGLILKFGGHAMAAGLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLET
AQLIQQAGPWGQAFAEPVFDNIFEILDQRIVGKNHLKMTLISSQGGEPLDAIAFNVDLKSWPNHRIKYIHAAYKLDINFY
QGRTRLQLLIQAMNPVQQA
>Mature_579_residues
MLIKQRQQPEFTVNLPNVPDVLKRIYITRGISDESQLDKQLQTLLPFHTLKGINEACLRLENALRSEQRILIIGDFDADG
ATSTALAITALRAMGAKFVEYLVPNRFEFGYGLTPAIVEVASKWQPHLIITVDNGIASFEGVDAANKMGIDVLITDHHLP
AESLPDACAIVNPNQPGCLFPSKSIAGVGVIFYVMLALRRHLSNCNWFNEINIPEPNMASFLDLVALGTVADVVGLDQNN
RIMVNQGMMRIRQGQCREGINALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGIECLITTDPKMARNFCQQLDE
LNLERRQIESEMKEQAMLALEKLSINDEENKQLPVALCLHDKTWHQGVIGILAGRMKEKYHRPVIAFASVSDHELKGSAR
SVPDLNIRDVLAAVDKDNPGLILKFGGHAMAAGLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLET
AQLIQQAGPWGQAFAEPVFDNIFEILDQRIVGKNHLKMTLISSQGGEPLDAIAFNVDLKSWPNHRIKYIHAAYKLDINFY
QGRTRLQLLIQAMNPVQQA

Specific function: Single-stranded-DNA-specific exonuclease. Required for many types of recombinational events, although the stringency of the requirement for recJ appears to vary with the type of recombinational event monitored and the other recombination gene products whi

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recJ family [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=573, Percent_Identity=50.9598603839442, Blast_Score=592, Evalue=1e-170,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 64288; Mature: 64288

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIKQRQQPEFTVNLPNVPDVLKRIYITRGISDESQLDKQLQTLLPFHTLKGINEACLRL
CCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
ENALRSEQRILIIGDFDADGATSTALAITALRAMGAKFVEYLVPNRFEFGYGLTPAIVEV
HHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
ASKWQPHLIITVDNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLF
HHCCCCEEEEEECCCCCCCCCCCCHHHCCEEEEEECCCCCHHCCCCCEEEECCCCCCCCC
PSKSIAGVGVIFYVMLALRRHLSNCNWFNEINIPEPNMASFLDLVALGTVADVVGLDQNN
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
RIMVNQGMMRIRQGQCREGINALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGI
EEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCE
ECLITTDPKMARNFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEENKQLPVALCLH
EEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
DKTWHQGVIGILAGRMKEKYHRPVIAFASVSDHELKGSARSVPDLNIRDVLAAVDKDNPG
CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCC
LILKFGGHAMAAGLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLET
EEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEECCCCCCHHCCHHH
AQLIQQAGPWGQAFAEPVFDNIFEILDQRIVGKNHLKMTLISSQGGEPLDAIAFNVDLKS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEECCC
WPNHRIKYIHAAYKLDINFYQGRTRLQLLIQAMNPVQQA
CCCCCEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLIKQRQQPEFTVNLPNVPDVLKRIYITRGISDESQLDKQLQTLLPFHTLKGINEACLRL
CCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
ENALRSEQRILIIGDFDADGATSTALAITALRAMGAKFVEYLVPNRFEFGYGLTPAIVEV
HHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
ASKWQPHLIITVDNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLF
HHCCCCEEEEEECCCCCCCCCCCCHHHCCEEEEEECCCCCHHCCCCCEEEECCCCCCCCC
PSKSIAGVGVIFYVMLALRRHLSNCNWFNEINIPEPNMASFLDLVALGTVADVVGLDQNN
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
RIMVNQGMMRIRQGQCREGINALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGI
EEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCE
ECLITTDPKMARNFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEENKQLPVALCLH
EEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
DKTWHQGVIGILAGRMKEKYHRPVIAFASVSDHELKGSARSVPDLNIRDVLAAVDKDNPG
CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCC
LILKFGGHAMAAGLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLET
EEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEECCCCCCHHCCHHH
AQLIQQAGPWGQAFAEPVFDNIFEILDQRIVGKNHLKMTLISSQGGEPLDAIAFNVDLKS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEECCC
WPNHRIKYIHAAYKLDINFYQGRTRLQLLIQAMNPVQQA
CCCCCEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8168497 [H]