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The map label for this gene is ybaO [C]

Identifier: 54294473

GI number: 54294473

Start: 1718166

End: 1718687

Strand: Direct

Name: ybaO [C]

Synonym: lpl1542

Alternate gene names: 54294473

Gene position: 1718166-1718687 (Clockwise)

Preceding gene: 54294466

Following gene: 54294474

Centisome position: 51.35

GC content: 33.14

Gene sequence:

>522_bases
ATGAAAAACAAGTCAACAAAAAATTATCCAAATGAAAAAAATACAGAATATCCAATTGAAATACTTGATAAAATTGATAG
AAAAATTCTAAATATTCTTCAGAAAAATAATCAAATTACTAACCAGGCATTGGCAGATATAGTTGGAATCTCTGCCCCAC
CCTGCTTTCGAAGAGTCAAACGCCTGAGAGAGGAAAAAATTATCGTTAACGATGTTGCTTTGGTTGATCCATTTAAAGTA
GGCAGACCATTAATTGTGTTCGTCAATATTACTCTTGAAAAACAAAGAGAAGATCTGCTAACTCATTTTGAAAGAAAAAT
GCACGAAGTGCCTGAGGTTATGCAATGCTATTTTGTCTCGGGAGACACAGATTACCTGCTTATTATTCATGTCAAAGATA
TGAATCATTACAATGAATTTGCCAGGCGAGTATTCGCTAATGAGCCCAATATTAGAAAATTCAGAAGCAGCTTTTGTCTT
AATAGAACCAAATATAATACACAAGTTGTTTTGGATGAGTAG

Upstream 100 bases:

>100_bases
TGTGTGGAGGTAAGTTAACATAAAACAAATATAAATAAATTTCTTATTTTATTTATAAAAATTACTTTTTATAATGTATT
TTTGCAACAAAAGGTAATAT

Downstream 100 bases:

>100_bases
TAACTAGCAAGTACCTGCATGGTTAACAAACCCAATCCCGCATGTACTACAATTAATTTAGGAGAGGAATCACAAGGAGC
CAACCATGCAAGAATCAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MKNKSTKNYPNEKNTEYPIEILDKIDRKILNILQKNNQITNQALADIVGISAPPCFRRVKRLREEKIIVNDVALVDPFKV
GRPLIVFVNITLEKQREDLLTHFERKMHEVPEVMQCYFVSGDTDYLLIIHVKDMNHYNEFARRVFANEPNIRKFRSSFCL
NRTKYNTQVVLDE

Sequences:

>Translated_173_residues
MKNKSTKNYPNEKNTEYPIEILDKIDRKILNILQKNNQITNQALADIVGISAPPCFRRVKRLREEKIIVNDVALVDPFKV
GRPLIVFVNITLEKQREDLLTHFERKMHEVPEVMQCYFVSGDTDYLLIIHVKDMNHYNEFARRVFANEPNIRKFRSSFCL
NRTKYNTQVVLDE
>Mature_173_residues
MKNKSTKNYPNEKNTEYPIEILDKIDRKILNILQKNNQITNQALADIVGISAPPCFRRVKRLREEKIIVNDVALVDPFKV
GRPLIVFVNITLEKQREDLLTHFERKMHEVPEVMQCYFVSGDTDYLLIIHVKDMNHYNEFARRVFANEPNIRKFRSSFCL
NRTKYNTQVVLDE

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=149, Percent_Identity=37.5838926174497, Blast_Score=123, Evalue=7e-30,
Organism=Escherichia coli, GI1787116, Length=154, Percent_Identity=35.7142857142857, Blast_Score=105, Evalue=1e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 20469; Mature: 20469

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKSTKNYPNEKNTEYPIEILDKIDRKILNILQKNNQITNQALADIVGISAPPCFRRVK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHH
RLREEKIIVNDVALVDPFKVGRPLIVFVNITLEKQREDLLTHFERKMHEVPEVMQCYFVS
HHHHHCEEHHHHHEECCHHCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHEEEEC
GDTDYLLIIHVKDMNHYNEFARRVFANEPNIRKFRSSFCLNRTKYNTQVVLDE
CCCCEEEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEC
>Mature Secondary Structure
MKNKSTKNYPNEKNTEYPIEILDKIDRKILNILQKNNQITNQALADIVGISAPPCFRRVK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHH
RLREEKIIVNDVALVDPFKVGRPLIVFVNITLEKQREDLLTHFERKMHEVPEVMQCYFVS
HHHHHCEEHHHHHEECCHHCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHEEEEC
GDTDYLLIIHVKDMNHYNEFARRVFANEPNIRKFRSSFCLNRTKYNTQVVLDE
CCCCEEEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]