| Definition | Legionella pneumophila str. Lens, complete genome. |
|---|---|
| Accession | NC_006369 |
| Length | 3,345,687 |
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The map label for this gene is lssE [H]
Identifier: 54294439
GI number: 54294439
Start: 1677546
End: 1680068
Strand: Reverse
Name: lssE [H]
Synonym: lpl1508
Alternate gene names: 54294439
Gene position: 1680068-1677546 (Counterclockwise)
Preceding gene: 54294440
Following gene: 54294435
Centisome position: 50.22
GC content: 33.41
Gene sequence:
>2523_bases ATGCCATCAATGGTACTCCCTAAACCATCTAATGCTTACACTTTCGCATATTATTTAACTATCACCTTTGCCATGCTAAC ACTAATTTTGGGGTTGTCTGTCCTAATTGGTTGGCATTTTGGTATTGAGTTTTTAATTCAATTCCAATCAGGTTCAGTAG CAGTTGTTTATAATACTGCTCTATGCTTTATTGTTTTGTCCCTTGCTATTCTATTTTCTCTAAATTGCTATTATAAGTCG TCTTTAACTTTAAGTATTATTGTTTTTGTTTTTTCTGGTTTGGGTTTTTCCCAGCATATTTTAGGTGTTAACCTTGGGGT TGATGAATTTTTTTTCCATCACTATCATGCCTTTAAAAATGCTTATCCAGGCCGGATGGCAGCAAACACCGCTTTTTGCT TTTTAATGATATCGGTTGCTCTTATTATGATGAATTTAAAATGCTATAGGTCATTTAATAATTCATTAGCTGGTGCACTT GGGTTTCTAGTATTTTGTTTGGCAATTTTATTCATAAGTGGGTATTTCTCAGAAATTCAACACGCTTACCAATGGGGAGA TAAAACCCCCATGTCAATTAATACGGCAATTGATTTTTTTATGTTGTCCTCGGCAACAATCGGACTATATTGGAGGAACA GTATCTATTTTCAATTGAATTCCAGTATTGCGATGCCTTATCTATTCTCGTTTTGTATTATGTTAACTTTTACATTACTA TCATTCGAAATTTTAGAAAAGGAAAATAGGTTAAACTTAAGTTTTTCAATCGCAACATTTGTTATTGGCATTTTTCTTTC TTTCCTTTTTGGATTGGTTATCAGATTGTGGCAACTGGCAAAACTATCAGCTATAGCGGCTAAATATGCATTTTTAGAAG TCGAGGCCACCCTGGAATCAACAGCTGATGGTATTTTGGTAGTGGATAAAGAAAGCAAAGTGATTAATTACAATCAACGT TTTTTAGACATGTGGCACCAGGGAACAAATCCGCCACGTATAATAAACTATCTAGATATCAAAGAAGAGATTAATAAACA ATTAGTGAATAAAAGAGAAGTAATCCACAGAATTAATCAAACTATTAAACATCCTGATCATCAAAATTCATTCGAATTAA AACTTAAAGGCAATCTTTATTATGATTGCTACACCCAACCACTAAAATTGGATGAAGATATTATTGGTCGCGTTTGGAGT TTTAGAGATATTACTATTCCTAAAAGGCTTGAAATGGAATTATCCCATCAATCTACGCATGATACACTCACCAATTTGCC TAATAAGGTGTTGGCTATCGACATGCTGGGATATGCAATGAAAGGTGCAATTAGCGATAAAAAAATTGTTGGGGTGTATT TACTGGATTTAGATCGATTTACGCAAATTAATGATGTATTTGGTCATAGCAAGGGAGATGAAATAATTAAAATTATTGCC AAACGATTAAAAGATTGTGTGCCAGTTGAGCATATCCTTGGGCGAATTAGCGGCGATCAATTTATTGTAATTGCGAGTCT TGATGAAATTAGAGAAGCTGTTTTCGGAGTTACACGGTTATTAGCTGCCTTTCATGAGCCTGTAAAAATGAATAGCCATT GTATCAAAATGAGTTGCAGCATAGGTGTTTCCTTCTATCCAAGAGATGGCAATACAGTTGACGTGCTGCTATCCAAAGCT GATATTGCTTTGTCTCGAACAAAAATCGAAGGCCGTAATAACTTTCAATTTTATACCAGGGACATGAATACCTATACTTT AGAACATATTCTATTAGAAAATGAATTAAGGGATGCTATTAAAAAAAGAGAATTTGTTTTGTATTATCAACCTATTCTGG AGTTAAGATCTTTGAATATAAGTGGCTTTGAAGCGTTAATCCGCTGGAATCATCCCAGAAATGGATTACTTCTCCCTGAA AAATTTATTCAGCTGGCGGAAGAAATAGGAATAATTAGTGAGATTGGTGATTGGGTACTTACAACTGTTTGTAAGCAGAT AAAGTCATGGCAAAAACAGGGAGTTAATAATTTAAAGGTTGCTGTCAATATTTCGCCAAAACATTTAAAGTTTCGACATC TTCCAATACGAATTAACGAAATATTATCTGAGTTTCAGGTGAAATCAGAATCTATTGAATTAGAGTTAACAGAAAATATT TTGATAGACAAGTCGAGTGGTATTATTGATACTTTAAATGAGTTAAAGGAAATAGGCATTAAAATATCAATTGATGATTT TGGCACCGGGTATTCTTGTCTAAGTTATTTAAAAGAATTGCCAATTGATATAATAAAAATTGATAAAGAATTTATCAAAG ATCTTATCACGAACCAACCGAACCAAGCCTTGGTAAAAGCAATAATTGCAATGGCGAAAAATCTTGGGTTGCATTTGATT GCTGAGGGAATTGAAAACAAATATCAACTTGAAATTTTACAAAACTTGGGCTGTCATTATGGACAAGGATACTATTTTTA TCATCCCATGCCACCTGAAAAATGTACGCAATTTTTACAATAA
Upstream 100 bases:
>100_bases AGAACGTTGATGAAGTTGTTACGGTACTATGAAAAAATGGTCTATTATTATAATATTAGTCTTATTTTTGCAAGGATATC ATTGCTAGGGATATAACATT
Downstream 100 bases:
>100_bases TTTATTTACTTGCCTCATGATCCGGATGAACGATAAAAATCCCTGGCGCATTACGTAAGTACTCGTGATAATCCATACCA TAGCCAAAAATATAATGATC
Product: hypothetical protein
Products: NA
Alternate protein names: Bacteriophytochrome cph2 [H]
Number of amino acids: Translated: 840; Mature: 839
Protein sequence:
>840_residues MPSMVLPKPSNAYTFAYYLTITFAMLTLILGLSVLIGWHFGIEFLIQFQSGSVAVVYNTALCFIVLSLAILFSLNCYYKS SLTLSIIVFVFSGLGFSQHILGVNLGVDEFFFHHYHAFKNAYPGRMAANTAFCFLMISVALIMMNLKCYRSFNNSLAGAL GFLVFCLAILFISGYFSEIQHAYQWGDKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLFSFCIMLTFTLL SFEILEKENRLNLSFSIATFVIGIFLSFLFGLVIRLWQLAKLSAIAAKYAFLEVEATLESTADGILVVDKESKVINYNQR FLDMWHQGTNPPRIINYLDIKEEINKQLVNKREVIHRINQTIKHPDHQNSFELKLKGNLYYDCYTQPLKLDEDIIGRVWS FRDITIPKRLEMELSHQSTHDTLTNLPNKVLAIDMLGYAMKGAISDKKIVGVYLLDLDRFTQINDVFGHSKGDEIIKIIA KRLKDCVPVEHILGRISGDQFIVIASLDEIREAVFGVTRLLAAFHEPVKMNSHCIKMSCSIGVSFYPRDGNTVDVLLSKA DIALSRTKIEGRNNFQFYTRDMNTYTLEHILLENELRDAIKKREFVLYYQPILELRSLNISGFEALIRWNHPRNGLLLPE KFIQLAEEIGIISEIGDWVLTTVCKQIKSWQKQGVNNLKVAVNISPKHLKFRHLPIRINEILSEFQVKSESIELELTENI LIDKSSGIIDTLNELKEIGIKISIDDFGTGYSCLSYLKELPIDIIKIDKEFIKDLITNQPNQALVKAIIAMAKNLGLHLI AEGIENKYQLEILQNLGCHYGQGYYFYHPMPPEKCTQFLQ
Sequences:
>Translated_840_residues MPSMVLPKPSNAYTFAYYLTITFAMLTLILGLSVLIGWHFGIEFLIQFQSGSVAVVYNTALCFIVLSLAILFSLNCYYKS SLTLSIIVFVFSGLGFSQHILGVNLGVDEFFFHHYHAFKNAYPGRMAANTAFCFLMISVALIMMNLKCYRSFNNSLAGAL GFLVFCLAILFISGYFSEIQHAYQWGDKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLFSFCIMLTFTLL SFEILEKENRLNLSFSIATFVIGIFLSFLFGLVIRLWQLAKLSAIAAKYAFLEVEATLESTADGILVVDKESKVINYNQR FLDMWHQGTNPPRIINYLDIKEEINKQLVNKREVIHRINQTIKHPDHQNSFELKLKGNLYYDCYTQPLKLDEDIIGRVWS FRDITIPKRLEMELSHQSTHDTLTNLPNKVLAIDMLGYAMKGAISDKKIVGVYLLDLDRFTQINDVFGHSKGDEIIKIIA KRLKDCVPVEHILGRISGDQFIVIASLDEIREAVFGVTRLLAAFHEPVKMNSHCIKMSCSIGVSFYPRDGNTVDVLLSKA DIALSRTKIEGRNNFQFYTRDMNTYTLEHILLENELRDAIKKREFVLYYQPILELRSLNISGFEALIRWNHPRNGLLLPE KFIQLAEEIGIISEIGDWVLTTVCKQIKSWQKQGVNNLKVAVNISPKHLKFRHLPIRINEILSEFQVKSESIELELTENI LIDKSSGIIDTLNELKEIGIKISIDDFGTGYSCLSYLKELPIDIIKIDKEFIKDLITNQPNQALVKAIIAMAKNLGLHLI AEGIENKYQLEILQNLGCHYGQGYYFYHPMPPEKCTQFLQ >Mature_839_residues PSMVLPKPSNAYTFAYYLTITFAMLTLILGLSVLIGWHFGIEFLIQFQSGSVAVVYNTALCFIVLSLAILFSLNCYYKSS LTLSIIVFVFSGLGFSQHILGVNLGVDEFFFHHYHAFKNAYPGRMAANTAFCFLMISVALIMMNLKCYRSFNNSLAGALG FLVFCLAILFISGYFSEIQHAYQWGDKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLFSFCIMLTFTLLS FEILEKENRLNLSFSIATFVIGIFLSFLFGLVIRLWQLAKLSAIAAKYAFLEVEATLESTADGILVVDKESKVINYNQRF LDMWHQGTNPPRIINYLDIKEEINKQLVNKREVIHRINQTIKHPDHQNSFELKLKGNLYYDCYTQPLKLDEDIIGRVWSF RDITIPKRLEMELSHQSTHDTLTNLPNKVLAIDMLGYAMKGAISDKKIVGVYLLDLDRFTQINDVFGHSKGDEIIKIIAK RLKDCVPVEHILGRISGDQFIVIASLDEIREAVFGVTRLLAAFHEPVKMNSHCIKMSCSIGVSFYPRDGNTVDVLLSKAD IALSRTKIEGRNNFQFYTRDMNTYTLEHILLENELRDAIKKREFVLYYQPILELRSLNISGFEALIRWNHPRNGLLLPEK FIQLAEEIGIISEIGDWVLTTVCKQIKSWQKQGVNNLKVAVNISPKHLKFRHLPIRINEILSEFQVKSESIELELTENIL IDKSSGIIDTLNELKEIGIKISIDDFGTGYSCLSYLKELPIDIIKIDKEFIKDLITNQPNQALVKAIIAMAKNLGLHLIA EGIENKYQLEILQNLGCHYGQGYYFYHPMPPEKCTQFLQ
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG5001
COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 GGDEF domains [H]
Homologues:
Organism=Escherichia coli, GI1787541, Length=429, Percent_Identity=34.7319347319347, Blast_Score=288, Evalue=7e-79, Organism=Escherichia coli, GI87081921, Length=435, Percent_Identity=31.0344827586207, Blast_Score=245, Evalue=9e-66, Organism=Escherichia coli, GI226510982, Length=415, Percent_Identity=28.1927710843373, Blast_Score=193, Evalue=3e-50, Organism=Escherichia coli, GI1790496, Length=250, Percent_Identity=34.8, Blast_Score=165, Evalue=1e-41, Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=36.9294605809129, Blast_Score=155, Evalue=9e-39, Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=30.7692307692308, Blast_Score=148, Evalue=1e-36, Organism=Escherichia coli, GI87081845, Length=241, Percent_Identity=34.0248962655602, Blast_Score=147, Evalue=3e-36, Organism=Escherichia coli, GI1787055, Length=246, Percent_Identity=32.9268292682927, Blast_Score=139, Evalue=9e-34, Organism=Escherichia coli, GI87081980, Length=241, Percent_Identity=34.0248962655602, Blast_Score=134, Evalue=3e-32, Organism=Escherichia coli, GI87082096, Length=421, Percent_Identity=25.41567695962, Blast_Score=129, Evalue=8e-31, Organism=Escherichia coli, GI1788849, Length=305, Percent_Identity=28.1967213114754, Blast_Score=128, Evalue=1e-30, Organism=Escherichia coli, GI1786507, Length=255, Percent_Identity=27.843137254902, Blast_Score=127, Evalue=3e-30, Organism=Escherichia coli, GI87081881, Length=178, Percent_Identity=30.3370786516854, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1788381, Length=464, Percent_Identity=20.6896551724138, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1786584, Length=159, Percent_Identity=27.0440251572327, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI145693134, Length=180, Percent_Identity=28.8888888888889, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1787056, Length=234, Percent_Identity=27.3504273504274, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1787410, Length=150, Percent_Identity=28, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=28.9940828402367, Blast_Score=63, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR003018 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 [H]
Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]
EC number: NA
Molecular weight: Translated: 95923; Mature: 95792
Theoretical pI: Translated: 7.21; Mature: 7.21
Prosite motif: PS50883 EAL ; PS50887 GGDEF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSMVLPKPSNAYTFAYYLTITFAMLTLILGLSVLIGWHFGIEFLIQFQSGSVAVVYNTA CCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEHHH LCFIVLSLAILFSLNCYYKSSLTLSIIVFVFSGLGFSQHILGVNLGVDEFFFHHYHAFKN HHHHHHHHHHHHHCCHHEECCHHHHHHHHHHHCCCCHHHHEEEECCHHHHHHHHHHHHHC AYPGRMAANTAFCFLMISVALIMMNLKCYRSFNNSLAGALGFLVFCLAILFISGYFSEIQ CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH HAYQWGDKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLFSFCIMLTFTLL HHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEECEEEEEECCCCCHHHHHHHHHHHHHHHH SFEILEKENRLNLSFSIATFVIGIFLSFLFGLVIRLWQLAKLSAIAAKYAFLEVEATLES HHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHC TADGILVVDKESKVINYNQRFLDMWHQGTNPPRIINYLDIKEEINKQLVNKREVIHRINQ CCCCEEEEECCCCEECHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH TIKHPDHQNSFELKLKGNLYYDCYTQPLKLDEDIIGRVWSFRDITIPKRLEMELSHQSTH HHCCCCCCCCEEEEEECCEEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCHH DTLTNLPNKVLAIDMLGYAMKGAISDKKIVGVYLLDLDRFTQINDVFGHSKGDEIIKIIA HHHHHCCCCEEHHHHHHHHHHCCCCCCEEEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHH KRLKDCVPVEHILGRISGDQFIVIASLDEIREAVFGVTRLLAAFHEPVKMNSHCIKMSCS HHHHHCCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE IGVSFYPRDGNTVDVLLSKADIALSRTKIEGRNNFQFYTRDMNTYTLEHILLENELRDAI CCEEEECCCCCEEEEEEEHHHHEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHH KKREFVLYYQPILELRSLNISGFEALIRWNHPRNGLLLPEKFIQLAEEIGIISEIGDWVL HHCCEEEEEHHHHHHHHCCCCCHHHHEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH TTVCKQIKSWQKQGVNNLKVAVNISPKHLKFRHLPIRINEILSEFQVKSESIELELTENI HHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCEEHHHHHHHHHHCCCCEEEEEECCE LIDKSSGIIDTLNELKEIGIKISIDDFGTGYSCLSYLKELPIDIIKIDKEFIKDLITNQP EEECCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHCCHHEEECCHHHHHHHHCCCC NQALVKAIIAMAKNLGLHLIAEGIENKYQLEILQNLGCHYGQGYYFYHPMPPEKCTQFLQ HHHHHHHHHHHHHCCCHHEEHHHCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHCC >Mature Secondary Structure PSMVLPKPSNAYTFAYYLTITFAMLTLILGLSVLIGWHFGIEFLIQFQSGSVAVVYNTA CCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEHHH LCFIVLSLAILFSLNCYYKSSLTLSIIVFVFSGLGFSQHILGVNLGVDEFFFHHYHAFKN HHHHHHHHHHHHHCCHHEECCHHHHHHHHHHHCCCCHHHHEEEECCHHHHHHHHHHHHHC AYPGRMAANTAFCFLMISVALIMMNLKCYRSFNNSLAGALGFLVFCLAILFISGYFSEIQ CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH HAYQWGDKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLFSFCIMLTFTLL HHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEECEEEEEECCCCCHHHHHHHHHHHHHHHH SFEILEKENRLNLSFSIATFVIGIFLSFLFGLVIRLWQLAKLSAIAAKYAFLEVEATLES HHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHC TADGILVVDKESKVINYNQRFLDMWHQGTNPPRIINYLDIKEEINKQLVNKREVIHRINQ CCCCEEEEECCCCEECHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH TIKHPDHQNSFELKLKGNLYYDCYTQPLKLDEDIIGRVWSFRDITIPKRLEMELSHQSTH HHCCCCCCCCEEEEEECCEEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCHH DTLTNLPNKVLAIDMLGYAMKGAISDKKIVGVYLLDLDRFTQINDVFGHSKGDEIIKIIA HHHHHCCCCEEHHHHHHHHHHCCCCCCEEEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHH KRLKDCVPVEHILGRISGDQFIVIASLDEIREAVFGVTRLLAAFHEPVKMNSHCIKMSCS HHHHHCCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE IGVSFYPRDGNTVDVLLSKADIALSRTKIEGRNNFQFYTRDMNTYTLEHILLENELRDAI CCEEEECCCCCEEEEEEEHHHHEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHH KKREFVLYYQPILELRSLNISGFEALIRWNHPRNGLLLPEKFIQLAEEIGIISEIGDWVL HHCCEEEEEHHHHHHHHCCCCCHHHHEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH TTVCKQIKSWQKQGVNNLKVAVNISPKHLKFRHLPIRINEILSEFQVKSESIELELTENI HHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCEEHHHHHHHHHHCCCCEEEEEECCE LIDKSSGIIDTLNELKEIGIKISIDDFGTGYSCLSYLKELPIDIIKIDKEFIKDLITNQP EEECCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHCCHHEEECCHHHHHHHHCCCC NQALVKAIIAMAKNLGLHLIAEGIENKYQLEILQNLGCHYGQGYYFYHPMPPEKCTQFLQ HHHHHHHHHHHHHCCCHHEEHHHCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231; 10978170; 11063585 [H]