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The map label for this gene is flgF [H]

Identifier: 54294164

GI number: 54294164

Start: 1368119

End: 1368865

Strand: Direct

Name: flgF [H]

Synonym: lpl1228

Alternate gene names: 54294164

Gene position: 1368119-1368865 (Clockwise)

Preceding gene: 54294163

Following gene: 54294165

Centisome position: 40.89

GC content: 40.96

Gene sequence:

>747_bases
ATGGAGCCGATCCTGTATAATTCCATTTCTGGTGGCCGTTCAGATTTTAAAAGACAGGAGATAATTGCCAATAATTTGGC
AAATATTAATACCCCAGGGTTTAAGGCTGATTTATATCAGGCACAAACCATGTACATGAATAATGCAAATGGAAATAACC
AATTCAGCGCACATTCATTTATCACTCAAAATGCGAACGGAGTTGATACTTCTCCTGGAGAGATTATTACCACAGGCAGA
GACTTGGATGTGGCCATTGATGGGGACGGATGGATAGCTGTTCAGGACAGCCAAGGTCGTGAAGCTTATACCAGAGGGGG
CAGTTTGCGTTTGAATCCTAATGGACAGTTAATTACTGCCTCGGGTAAGGTTGTTTTGGGTGATGGAGGCCCAATTTCTA
TCCCGCCTGCTCAATCCATAGAGATTGGTTCGGATGGAACTATATCGATTGTCCCTTTGGAAGGCGATGTCAAATCTCTG
GCAATCTTAGACAGGATTAAATTAGTTACGCTGGATAGAAATAATATCTATAAAAATGATGAAGGTTTGATCCAACTGAA
ATCAGGTGCGGCTATCGCTAATAGTAATATTAAATTGCAAAGCGGTGCATTGGAGGGGAGTAATGTAAATGCGATTGATC
AAATGGTAGCTATGATCAGTGCTGGTCGTGAATTTGATGCCCAAATGAAGCTATTATCAACAGTCGATGATAATGGACAA
AAATTGGCACAGCTATTGCAAGAATAA

Upstream 100 bases:

>100_bases
TTAATTAGTGCTCAGCGTAATTTTCAGGCGAATGCTCAAACGATTCGAACTGGTGATGCGATTACTCAAACGATCATCAA
TATTCGCTAGGAGGTAAGTC

Downstream 100 bases:

>100_bases
ATTTAATTAATTTAATTATTGTTCAGTTAGAGTGAGCCGCTTTCCAATGATTGGGTGTCACAGGTGATTTTAGGAATGGA
AGGTGTGCTTTATGCATTTG

Product: flagellar basal body rod protein FlgF

Products: NA

Alternate protein names: Putative proximal rod protein [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MEPILYNSISGGRSDFKRQEIIANNLANINTPGFKADLYQAQTMYMNNANGNNQFSAHSFITQNANGVDTSPGEIITTGR
DLDVAIDGDGWIAVQDSQGREAYTRGGSLRLNPNGQLITASGKVVLGDGGPISIPPAQSIEIGSDGTISIVPLEGDVKSL
AILDRIKLVTLDRNNIYKNDEGLIQLKSGAAIANSNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLSTVDDNGQ
KLAQLLQE

Sequences:

>Translated_248_residues
MEPILYNSISGGRSDFKRQEIIANNLANINTPGFKADLYQAQTMYMNNANGNNQFSAHSFITQNANGVDTSPGEIITTGR
DLDVAIDGDGWIAVQDSQGREAYTRGGSLRLNPNGQLITASGKVVLGDGGPISIPPAQSIEIGSDGTISIVPLEGDVKSL
AILDRIKLVTLDRNNIYKNDEGLIQLKSGAAIANSNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLSTVDDNGQ
KLAQLLQE
>Mature_248_residues
MEPILYNSISGGRSDFKRQEIIANNLANINTPGFKADLYQAQTMYMNNANGNNQFSAHSFITQNANGVDTSPGEIITTGR
DLDVAIDGDGWIAVQDSQGREAYTRGGSLRLNPNGQLITASGKVVLGDGGPISIPPAQSIEIGSDGTISIVPLEGDVKSL
AILDRIKLVTLDRNNIYKNDEGLIQLKSGAAIANSNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLSTVDDNGQ
KLAQLLQE

Specific function: Unknown

COG id: COG4787

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787317, Length=253, Percent_Identity=36.7588932806324, Blast_Score=171, Evalue=6e-44,
Organism=Escherichia coli, GI1787318, Length=255, Percent_Identity=34.1176470588235, Blast_Score=85, Evalue=4e-18,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR020013
- InterPro:   IPR012836 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 26378; Mature: 26378

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPILYNSISGGRSDFKRQEIIANNLANINTPGFKADLYQAQTMYMNNANGNNQFSAHSF
CCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEEEEEEEEECCCCCCCEEEEEE
ITQNANGVDTSPGEIITTGRDLDVAIDGDGWIAVQDSQGREAYTRGGSLRLNPNGQLITA
EECCCCCCCCCCCCEEECCCCEEEEECCCCEEEEECCCCCHHHHCCCEEEECCCCCEEEE
SGKVVLGDGGPISIPPAQSIEIGSDGTISIVPLEGDVKSLAILDRIKLVTLDRNNIYKND
CCEEEECCCCCEECCCCCCEEECCCCEEEEEEECCCHHHHEEEEEEEEEEEECCCCEECC
EGLIQLKSGAAIANSNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLSTVDDNGQ
CCEEEEECCCEEECCCEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHEEHHCCCCHH
KLAQLLQE
HHHHHHHC
>Mature Secondary Structure
MEPILYNSISGGRSDFKRQEIIANNLANINTPGFKADLYQAQTMYMNNANGNNQFSAHSF
CCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEEEEEEEEECCCCCCCEEEEEE
ITQNANGVDTSPGEIITTGRDLDVAIDGDGWIAVQDSQGREAYTRGGSLRLNPNGQLITA
EECCCCCCCCCCCCEEECCCCEEEEECCCCEEEEECCCCCHHHHCCCEEEECCCCCEEEE
SGKVVLGDGGPISIPPAQSIEIGSDGTISIVPLEGDVKSLAILDRIKLVTLDRNNIYKND
CCEEEECCCCCEECCCCCCEEECCCCEEEEEEECCCHHHHEEEEEEEEEEEECCCCEECC
EGLIQLKSGAAIANSNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLSTVDDNGQ
CCEEEEECCCEEECCCEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHEEHHCCCCHH
KLAQLLQE
HHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]