Click here to switch to the map view.

The map label for this gene is yddE [C]

Identifier: 54294153

GI number: 54294153

Start: 1358347

End: 1359135

Strand: Direct

Name: yddE [C]

Synonym: lpl1217

Alternate gene names: 54294153

Gene position: 1358347-1359135 (Clockwise)

Preceding gene: 54294151

Following gene: 54294154

Centisome position: 40.6

GC content: 39.04

Gene sequence:

>789_bases
ATGAAAAGCTTACCAATCTACCAAGTGGATGCATTTGCCTCAAATTTATTCAAAGGTAATCCTGCCGCTGTTTGTCCTTT
AGATAAATGGTTAAGTGATGAGACTATGCAAGCCATCGCAGCTGAAAACAATTTATCTGAAACAGCCTTTTTTGTTCCCG
AAAAGGATGGATACAGGATCCGGTGGTTTACCCCCAATGAAGAAGTGGCATTGTGCGGCCATGCCACTCTTGCCAGCTCT
TATGTGCTTTTTAATCAATTGGGCTTTTCAGGGGAAGAAATTATATTTAATAGTTTGAGCGGTAAGCTATGGGTTAAAAA
CACAGATCAAGGCTTGGTTATGGACTTTCCAGTTCTGCCCTATGAAGAAATTAATTTCAGTGCTGAACTGCAGCATTTGA
GTTTAAAAAAGCCATTTAAAACATTGCGAAGCCAATTTGATTTGATGTTTGTGTATCAAAATGCAGAAGAAGTAGTTGAG
GCAAAGCCTGATTTGAATGCTGTGGCTCATCTTGACTATAGGGGGTTAATATTAACTGCTCCAGGAATATCAACCGATGT
TTATTCTCGTTGTTTTTATCCTGGATGTAATGTACCAGAAGACCCGGTAACAGGATCTGCTCATTGTGTTATTGCTCCTT
ATTGGTGTGAACAGTTAAGGAAGAACCATATAACTGCTTTACAAGGAGGCCTCAGACAAGGTGATCTTTATTGTGAAGTG
AAGGAAAACAGAGTATTGCTCTATGGAAATTGCCATCTTTATTTGGAAGGAAGAATATATTTGCCATGA

Upstream 100 bases:

>100_bases
TTTAACAGAGAGGAAAGATACATGAATTTCTCATTATTAAATAGCTTGCTATATAATAACAGGCTATGTTATTATTCGCA
AGTTGTTTTAGGAGACATTT

Downstream 100 bases:

>100_bases
AATATTTAACAACCCCAAGGATTTTGCTAAGAGCGTGGGATGAAGAAGATACTATCCCCTTCTATAGAATGAGTCAGGAT
CCTCGGGTCATGAAGTATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFVPEKDGYRIRWFTPNEEVALCGHATLASS
YVLFNQLGFSGEEIIFNSLSGKLWVKNTDQGLVMDFPVLPYEEINFSAELQHLSLKKPFKTLRSQFDLMFVYQNAEEVVE
AKPDLNAVAHLDYRGLILTAPGISTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCEQLRKNHITALQGGLRQGDLYCEV
KENRVLLYGNCHLYLEGRIYLP

Sequences:

>Translated_262_residues
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFVPEKDGYRIRWFTPNEEVALCGHATLASS
YVLFNQLGFSGEEIIFNSLSGKLWVKNTDQGLVMDFPVLPYEEINFSAELQHLSLKKPFKTLRSQFDLMFVYQNAEEVVE
AKPDLNAVAHLDYRGLILTAPGISTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCEQLRKNHITALQGGLRQGDLYCEV
KENRVLLYGNCHLYLEGRIYLP
>Mature_262_residues
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFVPEKDGYRIRWFTPNEEVALCGHATLASS
YVLFNQLGFSGEEIIFNSLSGKLWVKNTDQGLVMDFPVLPYEEINFSAELQHLSLKKPFKTLRSQFDLMFVYQNAEEVVE
AKPDLNAVAHLDYRGLILTAPGISTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCEQLRKNHITALQGGLRQGDLYCEV
KENRVLLYGNCHLYLEGRIYLP

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=292, Percent_Identity=35.958904109589, Blast_Score=157, Evalue=7e-39,
Organism=Homo sapiens, GI74316009, Length=256, Percent_Identity=36.71875, Blast_Score=144, Evalue=9e-35,
Organism=Escherichia coli, GI1787737, Length=226, Percent_Identity=35.3982300884956, Blast_Score=90, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17542160, Length=314, Percent_Identity=33.1210191082803, Blast_Score=137, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI17542154, Length=314, Percent_Identity=33.1210191082803, Blast_Score=137, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI17542158, Length=311, Percent_Identity=33.1189710610932, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17542152, Length=311, Percent_Identity=33.1189710610932, Blast_Score=125, Evalue=2e-29,
Organism=Saccharomyces cerevisiae, GI6321818, Length=291, Percent_Identity=29.2096219931272, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29534; Mature: 29534

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFVPEKDGYRI
CCCCCEEEHHHHHHHHCCCCCCEECCHHHHCCHHHHHHHHHCCCCCCEEEEEECCCCCEE
RWFTPNEEVALCGHATLASSYVLFNQLGFSGEEIIFNSLSGKLWVKNTDQGLVMDFPVLP
EEECCCCCEEEEECHHHHHHHHEEHHCCCCCCEEEEECCCCEEEEEECCCCEEEECCCCC
YEEINFSAELQHLSLKKPFKTLRSQFDLMFVYQNAEEVVEAKPDLNAVAHLDYRGLILTA
HHHCCCCEEEHCCHHHHHHHHHHHCCEEEEEEECHHHHHHCCCCCCEEEEECCCEEEEEC
PGISTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCEQLRKNHITALQGGLRQGDLYCEV
CCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCHHHHHCCCCCCCEEEEE
KENRVLLYGNCHLYLEGRIYLP
ECCEEEEEEEEEEEEEEEEECC
>Mature Secondary Structure
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFVPEKDGYRI
CCCCCEEEHHHHHHHHCCCCCCEECCHHHHCCHHHHHHHHHCCCCCCEEEEEECCCCCEE
RWFTPNEEVALCGHATLASSYVLFNQLGFSGEEIIFNSLSGKLWVKNTDQGLVMDFPVLP
EEECCCCCEEEEECHHHHHHHHEEHHCCCCCCEEEEECCCCEEEEEECCCCEEEECCCCC
YEEINFSAELQHLSLKKPFKTLRSQFDLMFVYQNAEEVVEAKPDLNAVAHLDYRGLILTA
HHHCCCCEEEHCCHHHHHHHHHHHCCEEEEEEECHHHHHHCCCCCCEEEEECCCEEEEEC
PGISTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCEQLRKNHITALQGGLRQGDLYCEV
CCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCHHHHHCCCCCCCEEEEE
KENRVLLYGNCHLYLEGRIYLP
ECCEEEEEEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]