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The map label for this gene is 54294150

Identifier: 54294150

GI number: 54294150

Start: 1356633

End: 1357205

Strand: Direct

Name: 54294150

Synonym: lpl1214

Alternate gene names: NA

Gene position: 1356633-1357205 (Clockwise)

Preceding gene: 54294149

Following gene: 54294151

Centisome position: 40.55

GC content: 40.49

Gene sequence:

>573_bases
ATGTTACTTCCTATTCAGGTGACATTCCGAAATATGGATCCATCAAAAGCTGTTGAAAGCAGGGCTATAAAACTTGCTAA
AAAGCTTGATTGTCTTTATGACAAAATAATGGGTTGTCGAGTAGTCATTGAGTCTCCTCATCGCCATCATAACAAAGGAA
AGCTTTATCATGTACGTATTGATCTGACAGTTCCTGATGCTGAGTTAGTTGTGAGCCGTGAATCATCAAACAAGCATGCG
CATGAAGATGTATATGTTTCTCTAAGAGACGCTTTTAATGCGATTGAGCGCCAGCTTAAAAATTATGCAAATCAACGGCG
AGGCCATGTCAAGCGTCATGAGGATTCTATTCGTGGTGGGAGAGTTCTTGAAGTATGCCCCATTGCTGATTATGGCTACA
TAGAAACAATTGATGGGCGTCTGATACGATTTACAGGCCAAAGTGTCGTTGATTATGACATCAATAAATTAGAGGTTGGT
GACCGAGTACGATTTGTTGAAACGGTTAAAAACACACAGGAGGCTGCTGCAAGTACGGTTTACGTTGAAGGTAAACGCCA
TATTATGAACTAA

Upstream 100 bases:

>100_bases
ATGCTTATCTTTTTTCTATTGAAAGCAACATTTTTTTTGTCTATAGATTAGTAAATAAGATCTGAAATTATTCATAATCA
AAACATAAGGGAGGTTAAAA

Downstream 100 bases:

>100_bases
CAGGAGTATCAGAGGCCTATTGGTAATTTGCAGTTTGCTGTTGAGTAATTGTTTAGGCGAAATGACTGCTTCCAAACAAA
TGATTCAAAATTTTAAATAA

Product: hypothetical protein

Products: NA

Alternate protein names: SSU Ribosomal Modulation Protein; Cold-Shock Domain-Containing Protein; Sigma-54 Modulation Protein; Cold Shock Protein

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MLLPIQVTFRNMDPSKAVESRAIKLAKKLDCLYDKIMGCRVVIESPHRHHNKGKLYHVRIDLTVPDAELVVSRESSNKHA
HEDVYVSLRDAFNAIERQLKNYANQRRGHVKRHEDSIRGGRVLEVCPIADYGYIETIDGRLIRFTGQSVVDYDINKLEVG
DRVRFVETVKNTQEAAASTVYVEGKRHIMN

Sequences:

>Translated_190_residues
MLLPIQVTFRNMDPSKAVESRAIKLAKKLDCLYDKIMGCRVVIESPHRHHNKGKLYHVRIDLTVPDAELVVSRESSNKHA
HEDVYVSLRDAFNAIERQLKNYANQRRGHVKRHEDSIRGGRVLEVCPIADYGYIETIDGRLIRFTGQSVVDYDINKLEVG
DRVRFVETVKNTQEAAASTVYVEGKRHIMN
>Mature_190_residues
MLLPIQVTFRNMDPSKAVESRAIKLAKKLDCLYDKIMGCRVVIESPHRHHNKGKLYHVRIDLTVPDAELVVSRESSNKHA
HEDVYVSLRDAFNAIERQLKNYANQRRGHVKRHEDSIRGGRVLEVCPIADYGYIETIDGRLIRFTGQSVVDYDINKLEVG
DRVRFVETVKNTQEAAASTVYVEGKRHIMN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21812; Mature: 21812

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLPIQVTFRNMDPSKAVESRAIKLAKKLDCLYDKIMGCRVVIESPHRHHNKGKLYHVRI
CEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEE
DLTVPDAELVVSRESSNKHAHEDVYVSLRDAFNAIERQLKNYANQRRGHVKRHEDSIRGG
EEECCCHHEEEEECCCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCC
RVLEVCPIADYGYIETIDGRLIRFTGQSVVDYDINKLEVGDRVRFVETVKNTQEAAASTV
EEEEEECCCCCCCEEECCCEEEEEECCEEEECCCCEEECCCHHHHHHHHHHHHHHHHEEE
YVEGKRHIMN
EECCCHHCCC
>Mature Secondary Structure
MLLPIQVTFRNMDPSKAVESRAIKLAKKLDCLYDKIMGCRVVIESPHRHHNKGKLYHVRI
CEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEE
DLTVPDAELVVSRESSNKHAHEDVYVSLRDAFNAIERQLKNYANQRRGHVKRHEDSIRGG
EEECCCHHEEEEECCCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCC
RVLEVCPIADYGYIETIDGRLIRFTGQSVVDYDINKLEVGDRVRFVETVKNTQEAAASTV
EEEEEECCCCCCCEEECCCEEEEEECCEEEECCCCEEECCCHHHHHHHHHHHHHHHHEEE
YVEGKRHIMN
EECCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA